Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03094 and BSU21560

See Amino acid alignment / Visit BSNT_03094 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:32
# Commandline: needle
#    -asequence dna-align/BSNT_03094___yokK.1.22522.seq
#    -bsequence dna-align/BSU21560___yokK.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03094___yokK-BSU21560___yokK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03094___yokK-BSU21560___yokK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03094___yokK
# 2: BSU21560___yokK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 579
# Identity:     522/579 (90.2%)
# Similarity:   522/579 (90.2%)
# Gaps:          24/579 ( 4.1%)
# Score: 2478.0
# 
#
#=======================================

BSNT_03094___      1 ATGAGCTTCAATAATGTCAAACAAAAGTTGAAAGAGTTTTTAATTGATGC     50
                     ||||||||||.|||..||.||||||||||||||||||||...||||||||
BSU21560___yo      1 ATGAGCTTCACTAAGATCGAACAAAAGTTGAAAGAGTTTACGATTGATGC     50

BSNT_03094___     51 AAAAACAGATCCCAGAATCAATAAAAATGAACAACTCAAAGAAATTGAAA    100
                     ....|.|.||||.||.||.||||.||||||||||||||||||..||||||
BSU21560___yo     51 TGGCAGATATCCTAGCATTAATACAAATGAACAACTCAAAGAGCTTGAAA    100

BSNT_03094___    101 TGAACATAGGAAAACAATTACCTTCTGATTATAAGGACTTTTTGAAGGAA    150
                     ||||||||||.||.|||||||||||.|||||||||||||||||||||.||
BSU21560___yo    101 TGAACATAGGCAATCAATTACCTTCAGATTATAAGGACTTTTTGAAGAAA    150

BSNT_03094___    151 TATGGCGGCTGTTATTTAGAAAGTAAAAAAACATCAGATGAGATTGAGTA    200
                     |||||.||.||||||||||||||||||||||||.||||||||||||||||
BSU21560___yo    151 TATGGAGGATGTTATTTAGAAAGTAAAAAAACAACAGATGAGATTGAGTA    200

BSNT_03094___    201 TGACGTTTGCTATAAACCTATAGAGAAAGATCCTTGGATGGGCAAGGGCG    250
                     |||||||||||||||||||.|||||||||||||.||||||||||||||||
BSU21560___yo    201 TGACGTTTGCTATAAACCTTTAGAGAAAGATCCATGGATGGGCAAGGGCG    250

BSNT_03094___    251 ATGATACACAATTGTTAGAAGGTTTTTATGGTTTAGCGAACGATCATGAC    300
                     ||||||||||||||||||||||||||||||||||||||||.||||||.||
BSU21560___yo    251 ATGATACACAATTGTTAGAAGGTTTTTATGGTTTAGCGAATGATCATAAC    300

BSNT_03094___    301 AGTCTTCAGAAAGCAATCGATACATATTCTGATCGCTTTCCTAGAAATAT    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU21560___yo    301 AGTCTTCAGAAAGCAATCGATACATATTCTGATCGCTTTCCTAGAAATAT    350

BSNT_03094___    351 TATTCCTATCGCAAGCTCTGCAGGTGGGAATGAAATATGTATGGATATCG    400
                     ||||||||||||||||||||||||.||||||||||||||.||||||||||
BSU21560___yo    351 TATTCCTATCGCAAGCTCTGCAGGCGGGAATGAAATATGCATGGATATCG    400

BSNT_03094___    401 ATAATGGAAAGATATTGTTTTGGGATCATGAATTAAGTCATCCCGACAAA    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU21560___yo    401 ATAATGGAAAGATATTGTTTTGGGATCATGAATTAAGTCATCCCGACAAA    450

BSNT_03094___    451 GACTTTTTCTTAATTGCCAATTCGTTTGAGGAGTTTGTCTTCAGTTTAGT    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU21560___yo    451 GACTTTTTCTTAATTGCCAATTCGTTTGAGGAGTTTGTCTTCAGTTTAGT    500

BSNT_03094___    501 TGATGAACCAATTGAAGCTGATAAAGAAGATGATGGAATTCTGTATATTG    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU21560___yo    501 TGATGAACCAATTGAAGCTGATAAAGAAGATGATGGAATTCTGTATATTG    550

BSNT_03094___    551 AATAA------------------------    555
                     |||.|                        
BSU21560___yo    551 AATTAGATGATGACTTACTAAGCAGTTAA    579


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.