Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03000 and BSU18140

See Amino acid alignment / Visit BSNT_03000 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:22
# Commandline: needle
#    -asequence dna-align/BSNT_03000___ynfE.1.22522.seq
#    -bsequence dna-align/BSU18140___ynfE.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03000___ynfE-BSU18140___ynfE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03000___ynfE-BSU18140___ynfE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03000___ynfE
# 2: BSU18140___ynfE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     259/264 (98.1%)
# Similarity:   259/264 (98.1%)
# Gaps:           0/264 ( 0.0%)
# Score: 1275.0
# 
#
#=======================================

BSNT_03000___      1 GTGGATGAAATACTGAAACAGTATATGGTGCTGTACAAAAAAATGAGTAA     50
                     |||||||||||||||||||||||||||||||||||.||||||||||||||
BSU18140___yn      1 GTGGATGAAATACTGAAACAGTATATGGTGCTGTATAAAAAAATGAGTAA     50

BSNT_03000___     51 TATGATAAATGGTCCGGACTATCCAGGTAAGGAAAAAGACATCCAGCATC    100
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
BSU18140___yn     51 TATGATAAATGGTCCCGACTATCCAGGTAAGGAAAAAGACATCCAGCATC    100

BSNT_03000___    101 AAAAAGATCAGATCGAAGTTTACGAAAAACAGTTGCAGCAAGGATTTTCT    150
                     ||||||||||||||||||||||||||||||||.|||||||||||||||||
BSU18140___yn    101 AAAAAGATCAGATCGAAGTTTACGAAAAACAGCTGCAGCAAGGATTTTCT    150

BSNT_03000___    151 ACAGATTATGACTATGATGTGTTTGCTGATTCTGTTATCAAATGCGCATA    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU18140___yn    151 ACAGATTATGACTATGATGTGTTTGCTGATTCTGTTATCAAATGCGCATA    200

BSNT_03000___    201 TGGCGATATGACGCTGGAGGATTTAGAAGCCGTTTATTATGGATTGACAA    250
                     ||||||||||||||||||.|||||||||||||||||||||||||||||||
BSU18140___yn    201 TGGCGATATGACGCTGGAAGATTTAGAAGCCGTTTATTATGGATTGACAA    250

BSNT_03000___    251 CGCCATTTTTTTGA    264
                     |.||||||||||||
BSU18140___yn    251 CACCATTTTTTTGA    264


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.