Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02203 and BSU13100

See Amino acid alignment / Visit BSNT_02203 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:19:45
# Commandline: needle
#    -asequence dna-align/BSNT_02203___ykkD.1.22522.seq
#    -bsequence dna-align/BSU13100___ykkD.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02203___ykkD-BSU13100___ykkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02203___ykkD-BSU13100___ykkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02203___ykkD
# 2: BSU13100___ykkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 318
# Identity:     313/318 (98.4%)
# Similarity:   313/318 (98.4%)
# Gaps:           0/318 ( 0.0%)
# Score: 1545.0
# 
#
#=======================================

BSNT_02203___      1 ATGCTGCACTGGATCAGTTTATTGTGCGCGGGCTGTTTAGAAATGGCCGG     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13100___yk      1 ATGCTGCACTGGATCAGTTTATTGTGCGCGGGCTGTTTAGAAATGGCCGG     50

BSNT_02203___     51 CGTGGCCCTTATGAATCAATATGCGAAAGAAAAAAGCGTGAAATGGGTGC    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13100___yk     51 CGTGGCCCTTATGAATCAATATGCGAAAGAAAAAAGCGTGAAATGGGTGC    100

BSNT_02203___    101 TGTTGATCATTGTTGGTTTTGCCGCTTCATTTTCCTTGCTGTCGTACGCA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU13100___yk    101 TGTTGATCATTGTTGGTTTTGCCGCTTCATTTTCCTTGCTGTCGTACGCA    150

BSNT_02203___    151 ATGGAAACCATTCCGATGGGAACGGCTTACGCCGTCTGGACAGGAATTGG    200
                     ||||||||||.|||||||||||||||||||||.|||||||||||||||||
BSU13100___yk    151 ATGGAAACCACTCCGATGGGAACGGCTTACGCGGTCTGGACAGGAATTGG    200

BSNT_02203___    201 CACCGCCGGCGGGGCGCTTGTCGGCATCCTCTTTTACAAGGAGCAGAAAG    250
                     |||||||||||||||||||.||||||||||||||||||||||||||||||
BSU13100___yk    201 CACCGCCGGCGGGGCGCTTATCGGCATCCTCTTTTACAAGGAGCAGAAAG    250

BSNT_02203___    251 ACGCCAAACGGATCTTCTTTATCGCGTTGATTTTATGCTCAGCGGTTGGT    300
                     |||||||||||||||||||||||||||||||||||||||||||.||||||
BSU13100___yk    251 ACGCCAAACGGATCTTCTTTATCGCGTTGATTTTATGCTCAGCAGTTGGT    300

BSNT_02203___    301 TTGAAAATTCTGTCATAA    318
                     ||.|||||||||||||||
BSU13100___yk    301 TTAAAAATTCTGTCATAA    318


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