Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02067 and BSU12180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:19:27
# Commandline: needle
# -asequence dna-align/BSNT_02067___yjhA.1.22522.seq
# -bsequence dna-align/BSU12180___yjhA.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02067___yjhA-BSU12180___yjhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02067___yjhA-BSU12180___yjhA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02067___yjhA
# 2: BSU12180___yjhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 668
# Identity: 515/668 (77.1%)
# Similarity: 515/668 (77.1%)
# Gaps: 49/668 ( 7.3%)
# Score: 2011.0
#
#
#=======================================
BSNT_02067___ 1 ATGAAAAAAGTCTTATTACTATTATTTGTCTTGACGATCGGGTTAGCGCT 50
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12180___yj 1 ATGAAAAAAGTCTTATTACTATTATTTGTCTTGACGATCGGGTTAGCGCT 50
BSNT_02067___ 51 TTCTGCGTGCAGCCAATCGAGCGATGCGTCAGAGAAGGAAAAACCGAAAG 100
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12180___yj 51 TTCTGCGTGCAGCCAATCGAGCGATGCGTCAGAGAAGGAAAAACCGAAAG 100
BSNT_02067___ 101 AGAAAAAATCGCAAGAAGAGCTTGAAAAGGAACTTGATAAGGAATTGAAA 150
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12180___yj 101 AGAAAAAATCGCAAGAAGAGCTTGAAAAGGAACTTGATAAGGAATTGAAA 150
BSNT_02067___ 151 AAAGGCGGTGAGCCGAAGACCAAAAAAGATGATCAAATACATAAAATAGG 200
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU12180___yj 151 AAAGGCGGTGAGCCGAAGACCAAAAAAGATGATCAAATACATAAAATAGG 200
BSNT_02067___ 201 AGAAACAATTAAAGTAAATGATATTAATTTCACGGTGAATAAAGTGGATC 250
|||||||.||||||.|....|||..|||||.||.|||||||||||.|||.
BSU12180___yj 201 AGAAACATTTAAAGCAGGACATACGAATTTTACAGTGAATAAAGTTGATA 250
BSNT_02067___ 251 GTGAACAGAAGGGCCAATAT-GGAGATTTGGGTGGA-----AAAGACTAT 294
|.|..||.||.||..||||| .|| ||.|.||.||| || ||
BSU12180___yj 251 GAGTGCAAAAAGGTGAATATATGA-ATGTTGGCGGAGCTGTAA-----AT 294
BSNT_02067___ 295 GATAAAACAAAAACAGTAAAAGATAATGAAGAGCGGTTAATTATAGAAGT 344
||..|.|||||||||.||||||||.||||.||.|||.|.|||||||||||
BSU12180___yj 295 GAGGAGACAAAAACAATAAAAGATGATGAGGAACGGCTTATTATAGAAGT 344
BSNT_02067___ 345 GACCCTAGAATACGTTGGAA----------AAGGTTCAATGGAA--TACA 382
||||.||||| |||.|||||| || ||||
BSU12180___yj 345 ----------TACGATGGAAAATATAGGGGAAGATTCAAT--AAGCTACA 382
BSNT_02067___ 383 ACCGATTA--GGATTAGATCTGAAAGACAAGAAAAATAAATCAGTTCGCT 430
| ..||| ||.||.|||.|.|.|||.|||||..||.|||||||.||..
BSU12180___yj 383 A--TTTTATCGGGTTTGATTTAAGAGATAAGAATGATCAATCAGTGCGGC 430
BSNT_02067___ 431 CAGTCATTTCATTGGAGGATAAAGGAAAAATGTTTTTGGGGGGGAATCTG 480
|.||..||||..|.||.||.||.||.|.|||..||.||||.||.|..||.
BSU12180___yj 431 CTGTTTTTTCTATAGAAGAGAAGGGCAGAATCCTTATGGGAGGAACACTA 480
BSNT_02067___ 481 GCGTCAGGAAAAAAGGTGACAGGAGTAGTTAGTTATGTAATACCCAAAGG 530
|..||.||.||||||||.|||||.|||.|.||||||||.||.||.|||||
BSU12180___yj 481 GTATCGGGGAAAAAGGTTACAGGTGTACTCAGTTATGTCATCCCTAAAGG 530
BSNT_02067___ 531 GGAACAGAAAAATTACACATTAGTGTATAACCCTTTTTTAATAGATAC-- 578
.|||||||||.||||||||.|.||.|||||.||.||||||...|||||
BSU12180___yj 531 AGAACAGAAACATTACACACTGGTATATAATCCGTTTTTAGCTGATACAA 580
BSNT_02067___ 579 -TGGAAGTGATAGAATTGAAGAAAGCGCAAAATACAATATAGATTATTTG 627
|.|.|||.|||.| |||||.||.|.|||..||.||||.|||||.|||
BSU12180___yj 581 ATAGCAGTAATACA---GAAGAGAGAGTAAAGGACGATATTGATTACTTG 627
BSNT_02067___ 628 ATAAAATTAGAAAAATAG 645
.|.||.|||| |.|||
BSU12180___yj 628 GTGAAGTTAG---ATTAG 642
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