Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01002 and BSU05820

See Amino acid alignment / Visit BSNT_01002 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:30
# Commandline: needle
#    -asequence dna-align/BSNT_01002.1.22522.seq
#    -bsequence dna-align/BSU05820___gmuA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01002-BSU05820___gmuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01002-BSU05820___gmuA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01002
# 2: BSU05820___gmuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 333
# Identity:     206/333 (61.9%)
# Similarity:   206/333 (61.9%)
# Gaps:         117/333 (35.1%)
# Score: 990.0
# 
#
#=======================================

BSNT_01002         1 ATGGAACAGATGAAAATCACGAATTTAACAGACGAGCAAATCAGTTTTCA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05820___gm      1 ATGGAACAGATGAAAATCACGAATTTAACAGACGAGCAAATCAGTTTTCA     50

BSNT_01002        51 GCTTATCCTGCACAGTGGCAATGCCCGCAGCTGCATCATACAATCACTGC    100
                     |||.|||||||||||.||.|||||||||||||||||||||||||||||||
BSU05820___gm     51 GCTAATCCTGCACAGCGGAAATGCCCGCAGCTGCATCATACAATCACTGC    100

BSNT_01002       101 GCGCCTACAAAGAAGGGAACAAGGATGAGGCGGATGCCCTCATTGCCAAG    150
                     |||||||.|||||||||||.|||||.|||||.||||||||||||||||||
BSU05820___gm    101 GCGCCTATAAAGAAGGGAAAAAGGACGAGGCTGATGCCCTCATTGCCAAG    150

BSNT_01002       151 GCTGAGCAGGATTTATCCGCGGCCCATGACATTCACTTTCAAATGATACA    200
                     ||.|||||||||||||||||||||||||||||||||||||||||||||||
BSU05820___gm    151 GCGGAGCAGGATTTATCCGCGGCCCATGACATTCACTTTCAAATGATACA    200

BSNT_01002       201 AAAGGAATCCGGCTGA----------------------------------    216
                     .||||||||||||.||                                  
BSU05820___gm    201 GAAGGAATCCGGCGGAGAAGCAACAGCTTTTTCATTGCTGCTTATGCATG    250

BSNT_01002       216 --------------------------------------------------    216
                                                                       
BSU05820___gm    251 CAGAGGATCATCTGATGTCAACATTATCCATGAAAGAATTAGTGAAAGAG    300

BSNT_01002       216 ---------------------------------    216
                                                      
BSU05820___gm    301 ATGCTTGATCTCTTTAAAACCAAGAATATATAA    333


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