Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00964 and BSU05580

See Amino acid alignment / Visit BSNT_00964 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:25
# Commandline: needle
#    -asequence dna-align/BSNT_00964___ydgC.1.22522.seq
#    -bsequence dna-align/BSU05580___ydgC.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00964___ydgC-BSU05580___ydgC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00964___ydgC-BSU05580___ydgC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00964___ydgC
# 2: BSU05580___ydgC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 600
# Identity:     574/600 (95.7%)
# Similarity:   574/600 (95.7%)
# Gaps:          12/600 ( 2.0%)
# Score: 2798.5
# 
#
#=======================================

BSNT_00964___      1 TTGAAAAGTAAAAAAGGACGTAAAGGAGAAGAAAGCCGGAAACGGTTACT     50
                     |||||||            |||||||||.|||||||||.|||||.|||||
BSU05580___yd      1 TTGAAAA------------GTAAAGGAGTAGAAAGCCGAAAACGATTACT     38

BSNT_00964___     51 CAAAGCTGCCGCTAATGAATTTTCGATTCGGGGATTCCATGACGCGAAGG    100
                     .||||||||||||||||||||||||.||||||||||||||||||||||||
BSU05580___yd     39 TAAAGCTGCCGCTAATGAATTTTCGGTTCGGGGATTCCATGACGCGAAGG     88

BSNT_00964___    101 TAAGTGAAATTGTGAAAAAAGCTGGGTTCACGCAGCCTTCATTTTACCTG    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05580___yd     89 TAAGTGAAATTGTGAAAAAAGCTGGGTTCACGCAGCCTTCATTTTACCTG    138

BSNT_00964___    151 TACTTTCAAAGCAAAGAAGCCATCTTTGCCGAGTTAATAACCGATTTTCA    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05580___yd    139 TACTTTCAAAGCAAAGAAGCCATCTTTGCCGAGTTAATAACCGATTTTCA    188

BSNT_00964___    201 CTCTCGGGTCAGAAAGCTGACAGAGTCACTTCTTCTGGAAAACGGATTAA    250
                     ||||||.|||||||||||||||||||||||||||||||||||||||||||
BSU05580___yd    189 CTCTCGAGTCAGAAAGCTGACAGAGTCACTTCTTCTGGAAAACGGATTAA    238

BSNT_00964___    251 ACACGGAGGATGTGTCAAAACGGGTACTGCTAGCTGTAGAGACTGTTTTT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05580___yd    239 ACACGGAGGATGTGTCAAAACGGGTACTGCTAGCTGTAGAGACTGTTTTT    288

BSNT_00964___    301 CAATTTTTAGCTGAGGACAAGGATTTAACCAAGATCGGCTTTTTTCTCAA    350
                     ||||||||.|.|||||||||||||||||||||||||||||||||||||||
BSU05580___yd    289 CAATTTTTGGATGAGGACAAGGATTTAACCAAGATCGGCTTTTTTCTCAA    338

BSNT_00964___    351 CCCGGAAGCAAAACAAATGAAAAAAGACTTGGCGATGGTTTTGAAAGAGA    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05580___yd    339 CCCGGAAGCAAAACAAATGAAAAAAGACTTGGCGATGGTTTTGAAAGAGA    388

BSNT_00964___    401 ACTTAAAAGCAGAACAGCGGCTTGGCTATTTTCACTCTGAGCTGGATATG    450
                     |||||.||||||||||||||||||||||||||||||||||.|||||||||
BSU05580___yd    389 ACTTAGAAGCAGAACAGCGGCTTGGCTATTTTCACTCTGAACTGGATATG    438

BSNT_00964___    451 GAAACTGTCGCTGAGTGTTTGATCGGCATGATTGAACATTTAACCGATTC    500
                     |||||||||||||||||||||.|||||||||||||||||||||||||.||
BSU05580___yd    439 GAAACTGTCGCTGAGTGTTTGGTCGGCATGATTGAACATTTAACCGAATC    488

BSNT_00964___    501 ATTTTTGTTAACCGGAATCAAAGATCCGGCAAGCCTCGCAGCAGAGGTTG    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05580___yd    489 ATTTTTGTTAACCGGAATCAAAGATCCGGCAAGCCTCGCAGCAGAGGTTG    538

BSNT_00964___    551 TGAATCTTTTAATATACGGGATGCTTCCGAAAGGGAATGACGTAAGATGA    600
                     |||||||||||||.||||||||||||||||||||||||||.|||||||||
BSU05580___yd    539 TGAATCTTTTAATTTACGGGATGCTTCCGAAAGGGAATGATGTAAGATGA    588


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