Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00961 and BSU05540

See Amino acid alignment / Visit BSNT_00961 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:25
# Commandline: needle
#    -asequence dna-align/BSNT_00961___ydfS.1.22522.seq
#    -bsequence dna-align/BSU05540___ydfS.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00961___ydfS-BSU05540___ydfS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00961___ydfS-BSU05540___ydfS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00961___ydfS
# 2: BSU05540___ydfS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 708
# Identity:     701/708 (99.0%)
# Similarity:   701/708 (99.0%)
# Gaps:           0/708 ( 0.0%)
# Score: 3477.0
# 
#
#=======================================

BSNT_00961___      1 ATGATTGAACTTGAAGTTGTCATTAGAACGGTTGCCAGCTTTGGCTTGCT     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05540___yd      1 ATGATTGAACTTGAAGTTGTCATTAGAACGGTTGCCAGCTTTGGCTTGCT     50

BSNT_00961___     51 GTTAATCGCAGAACGAATTTTAGGCAAACAGACAATCTCTCAAATGACGA    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05540___yd     51 GTTAATCGCAGAACGAATTTTAGGCAAACAGACAATCTCTCAAATGACGA    100

BSNT_00961___    101 TTTTTGATTTTATTGCGGCGATCACACTAGGGGCGATTGCTGCCGGATTA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05540___yd    101 TTTTTGATTTTATTGCGGCGATCACACTAGGGGCGATTGCTGCCGGATTA    150

BSNT_00961___    151 GCTTACAATACTTCAATAAAACCGCATAATATGGCCATTTCGTTTAGTAT    200
                     ||||||||||||||||||||||||||.|||||||||||||||||||||||
BSU05540___yd    151 GCTTACAATACTTCAATAAAACCGCACAATATGGCCATTTCGTTTAGTAT    200

BSNT_00961___    201 TTTTGTGCTAACCATTTTTCTAATTTCGTTCCTGTCGATAAAGAACAGGA    250
                     ||||||||||||||||||||||||||||||.|||||||||||||||||||
BSU05540___yd    201 TTTTGTGCTAACCATTTTTCTAATTTCGTTTCTGTCGATAAAGAACAGGA    250

BSNT_00961___    251 AGCTGAGGAAATTTTTTGCCGGAGATCCTACAGTGCTGATTCAAAACGGG    300
                     ||||||||||||||||||||||||||||.|||||||||||||||||||||
BSU05540___yd    251 AGCTGAGGAAATTTTTTGCCGGAGATCCAACAGTGCTGATTCAAAACGGG    300

BSNT_00961___    301 AAGATACTTGAATCAAATATGAGGAAAATGCGTTACACACTTGATTATTT    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05540___yd    301 AAGATACTTGAATCAAATATGAGGAAAATGCGTTACACACTTGATTATTT    350

BSNT_00961___    351 AAATCAGCAATTACGGGAAAAAGAAATATTTAATATCGAAGAAGTTCTTT    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05540___yd    351 AAATCAGCAATTACGGGAAAAAGAAATATTTAATATCGAAGAAGTTCTTT    400

BSNT_00961___    401 TTGCCATTCTTGAAACGAATGGTCAGCTGACTGTGTTAAGAAAACCGCAA    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05540___yd    401 TTGCCATTCTTGAAACGAATGGTCAGCTGACTGTGTTAAGAAAACCGCAA    450

BSNT_00961___    451 TTCCGGCATGTGACCAAACAGGATTTAATGATTGCGGTAAACCAAGAACA    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05540___yd    451 TTCCGGCATGTGACCAAACAGGATTTAATGATTGCGGTAAACCAAGAACA    500

BSNT_00961___    501 CAGGCTTCCGATAGAGCTTATTATGGACGGAGAAATCATTGAGAATAATT    550
                     .||||||||||||||.||||||||||||||||||||||||||||||||||
BSU05540___yd    501 AAGGCTTCCGATAGAACTTATTATGGACGGAGAAATCATTGAGAATAATT    550

BSNT_00961___    551 TAAAGCAGAATCGTTTGACGGAATCCTGGCTTTTGGAGGAATTGCGAAAA    600
                     |||||||||||||||||||||||||||||||||||||.||||||||||||
BSU05540___yd    551 TAAAGCAGAATCGTTTGACGGAATCCTGGCTTTTGGAAGAATTGCGAAAA    600

BSNT_00961___    601 AGAGACATAAAGGTGAAAGAGACCGTGTACGCAGTGCTGCTGGGTAATGG    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05540___yd    601 AGAGACATAAAGGTGAAAGAGACCGTGTACGCAGTGCTGCTGGGTAATGG    650

BSNT_00961___    651 AGATATTTATGTGGATCAATATAAAGACCATATATCAGTCCCTATGGATA    700
                     .|||||||||||||||||||||||||||||||||||||||||||||||||
BSU05540___yd    651 GGATATTTATGTGGATCAATATAAAGACCATATATCAGTCCCTATGGATA    700

BSNT_00961___    701 AGGAATGA    708
                     ||||||||
BSU05540___yd    701 AGGAATGA    708


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