Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00862 and BSU05010

See Amino acid alignment / Visit BSNT_00862 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:18
# Commandline: needle
#    -asequence dna-align/BSNT_00862___rapI.1.22522.seq
#    -bsequence dna-align/BSU05010___rapI.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00862___rapI-BSU05010___rapI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00862___rapI-BSU05010___rapI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00862___rapI
# 2: BSU05010___rapI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1176
# Identity:    1122/1176 (95.4%)
# Similarity:  1122/1176 (95.4%)
# Gaps:           0/1176 ( 0.0%)
# Score: 5394.0
# 
#
#=======================================

BSNT_00862___      1 TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACATAGTCAC     50
                     ||||||||||||||||||||||||||||||||||||||||||.|||||||
BSU05010___ra      1 TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACTTAGTCAC     50

BSNT_00862___     51 AAAAAAGTTAAATGATTGGTATACATTAATAAAAGATGATCAAGTTGAGC    100
                     .||||||||||||||.||||||||||.|||||||.|||||||||||||||
BSU05010___ra     51 GAAAAAGTTAAATGAATGGTATACATCAATAAAAAATGATCAAGTTGAGC    100

BSNT_00862___    101 ATGCAGAGATTATAAAAATAGAAGTAGAGAAAGAATTGCTAAACATGGAA    150
                     |.||.|||||||||||||.|||||||||||||||||||.|||||||||||
BSU05010___ra    101 AAGCCGAGATTATAAAAACAGAAGTAGAGAAAGAATTGTTAAACATGGAA    150

BSNT_00862___    151 GAAAACCAAGATGCCTTGTTATATTATCAGTTATTAGATTTTAGGCACGA    200
                     |||||.|||||||||.|||||||||||||..|||||||.|||||.||.||
BSU05010___ra    151 GAAAATCAAGATGCCCTGTTATATTATCAACTATTAGAATTTAGACATGA    200

BSNT_00862___    201 GATAATGCTGAGTTATATGAAATCTAAAGAAATAGATGATCTCAATAATG    250
                     |||||||||||||||||||||||||||.||||||||.|||||||||||||
BSU05010___ra    201 GATAATGCTGAGTTATATGAAATCTAAGGAAATAGAAGATCTCAATAATG    250

BSNT_00862___    251 CTTATGAGACTATAAAAGAAATTGAGAAACAAGGGCAATTAACTGGTATG    300
                     ||||||||||||||||||||||||||||.|||||||||||||||||.|||
BSU05010___ra    251 CTTATGAGACTATAAAAGAAATTGAGAAGCAAGGGCAATTAACTGGCATG    300

BSNT_00862___    301 TTGGAATATTATTTTTACTTTTTTAAGGGTATGTATGAGTTTAGGCGAAA    350
                     ||||||||.||||||||||||||||||||||||||.|||||||||||.||
BSU05010___ra    301 TTGGAATACTATTTTTACTTTTTTAAGGGTATGTACGAGTTTAGGCGTAA    350

BSNT_00862___    351 AGAATTAACTTCAGCCATAAGTGCCTATCGAATAGCTGAATCAAAGTTGT    400
                     ||||||||.||||||.||||||||.|||||||||||||||||||||||||
BSU05010___ra    351 AGAATTAATTTCAGCGATAAGTGCTTATCGAATAGCTGAATCAAAGTTGT    400

BSNT_00862___    401 CGGAAGTTGAGGATGAAATAGAAAAAGCAGAGTTTTTTTTCAAAGTGTCC    450
                     |.||||||||||||||||||||.|||||||||||||||||||||||||||
BSU05010___ra    401 CAGAAGTTGAGGATGAAATAGAGAAAGCAGAGTTTTTTTTCAAAGTGTCC    450

BSNT_00862___    451 TATGTATATTATTATATGAAACAAACATATTTCTCCATGAATTATGCAAA    500
                     |||||||||||||||||||||||||||||.||||||||||||||||||||
BSU05010___ra    451 TATGTATATTATTATATGAAACAAACATACTTCTCCATGAATTATGCAAA    500

BSNT_00862___    501 TCGTGCACTCAAAATATTTAGAGAGTATGAAGAGTATGCGGTCCAAACTG    550
                     |||||||||||||||||||||||||||||||||.|||||.|||||.||||
BSU05010___ra    501 TCGTGCACTCAAAATATTTAGAGAGTATGAAGAATATGCTGTCCAGACTG    550

BSNT_00862___    551 TGCGTTGTCAATTTATTGTTGCAGGTAACCTGATCGATTCTTTAGAATAC    600
                     |||||||||||||||||||.|||||.|||.||||||||||.||.|||||.
BSU05010___ra    551 TGCGTTGTCAATTTATTGTAGCAGGAAACTTGATCGATTCATTGGAATAT    600

BSNT_00862___    601 GAAAGAGCCTTGGAACAATTTCTGAATTCTTTGGAAATTGCCAAGGGAAG    650
                     |||||||||||||||||||||.||||.||||||||||||.||||||.|||
BSU05010___ra    601 GAAAGAGCCTTGGAACAATTTTTGAAGTCTTTGGAAATTTCCAAGGAAAG    650

BSNT_00862___    651 TAACATAGAGCATTTAATTGCAATGTCACACATGAATATTGGGATTTGTT    700
                     ||||||||||||||||||||||||||||||.|||||||||||||||||||
BSU05010___ra    651 TAACATAGAGCATTTAATTGCAATGTCACATATGAATATTGGGATTTGTT    700

BSNT_00862___    701 ATGATGAATTGAAAGAATATAAAAAGGCTTCACAACATTTAATTTTAGCG    750
                     ||||||||||||||||||||||.|||||||||||||||||||||||||||
BSU05010___ra    701 ATGATGAATTGAAAGAATATAAGAAGGCTTCACAACATTTAATTTTAGCG    750

BSNT_00862___    751 TTAGAAATTTTCGAAAAATCAAAACATAGTTTCCTAACAAAGACTTTATT    800
                     |||||||||||.|||||||||||||||||||||.||||||||||||||||
BSU05010___ra    751 TTAGAAATTTTTGAAAAATCAAAACATAGTTTCTTAACAAAGACTTTATT    800

BSNT_00862___    801 CACTCTAACCTATGTAGAAGCAAAACAACAAAATTATGATGTTGCTTTGA    850
                     |||||||||||||||||||||||||||||||||||||.||||||||||||
BSU05010___ra    801 CACTCTAACCTATGTAGAAGCAAAACAACAAAATTATAATGTTGCTTTGA    850

BSNT_00862___    851 TATACTTTAGGAAAGGGCGATTTATTGCCGATAAAAGTGATGATAAGGAA    900
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05010___ra    851 TATACTTTAGGAAAGGGCGATTTATTGCCGATAAAAGTGATGATAAGGAA    900

BSNT_00862___    901 TACTCAGCGAAATTCAAAATATTAGAGGGGTTATTTTTTTCAGATGGCGA    950
                     |||||||||||||||||||||||||||||.|||||||||||.|||||.||
BSU05010___ra    901 TACTCAGCGAAATTCAAAATATTAGAGGGATTATTTTTTTCTGATGGTGA    950

BSNT_00862___    951 GACTCAATTAATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGT   1000
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05010___ra    951 GACTCAATTAATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGT   1000

BSNT_00862___   1001 TTGCAGATGTTGAAAATTTTTCGATTGAAGTCGCTGATTATTTTCATGAA   1050
                     ||||.|||||||||||||||||||||||||||||||||||||||||||||
BSU05010___ra   1001 TTGCTGATGTTGAAAATTTTTCGATTGAAGTCGCTGATTATTTTCATGAA   1050

BSNT_00862___   1051 CAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGC   1100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05010___ra   1051 CAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGC   1100

BSNT_00862___   1101 AAGACGAAAAATTAAAAAAGGGGAGATTATTAATGAAAATCAGCCGGATT   1150
                     |||||||||||||||||||||||||||||||.||||||||||||||||||
BSU05010___ra   1101 AAGACGAAAAATTAAAAAAGGGGAGATTATTGATGAAAATCAGCCGGATT   1150

BSNT_00862___   1151 CTATTGGCAGCAGTGATATTAGGTAG   1176
                     |||||||||||||||||.|||.||||
BSU05010___ra   1151 CTATTGGCAGCAGTGATTTTAAGTAG   1176


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