Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00862 and BSU05010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:17:18
# Commandline: needle
# -asequence dna-align/BSNT_00862___rapI.1.22522.seq
# -bsequence dna-align/BSU05010___rapI.2.22522.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00862___rapI-BSU05010___rapI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00862___rapI-BSU05010___rapI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00862___rapI
# 2: BSU05010___rapI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1176
# Identity: 1122/1176 (95.4%)
# Similarity: 1122/1176 (95.4%)
# Gaps: 0/1176 ( 0.0%)
# Score: 5394.0
#
#
#=======================================
BSNT_00862___ 1 TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACATAGTCAC 50
||||||||||||||||||||||||||||||||||||||||||.|||||||
BSU05010___ra 1 TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACTTAGTCAC 50
BSNT_00862___ 51 AAAAAAGTTAAATGATTGGTATACATTAATAAAAGATGATCAAGTTGAGC 100
.||||||||||||||.||||||||||.|||||||.|||||||||||||||
BSU05010___ra 51 GAAAAAGTTAAATGAATGGTATACATCAATAAAAAATGATCAAGTTGAGC 100
BSNT_00862___ 101 ATGCAGAGATTATAAAAATAGAAGTAGAGAAAGAATTGCTAAACATGGAA 150
|.||.|||||||||||||.|||||||||||||||||||.|||||||||||
BSU05010___ra 101 AAGCCGAGATTATAAAAACAGAAGTAGAGAAAGAATTGTTAAACATGGAA 150
BSNT_00862___ 151 GAAAACCAAGATGCCTTGTTATATTATCAGTTATTAGATTTTAGGCACGA 200
|||||.|||||||||.|||||||||||||..|||||||.|||||.||.||
BSU05010___ra 151 GAAAATCAAGATGCCCTGTTATATTATCAACTATTAGAATTTAGACATGA 200
BSNT_00862___ 201 GATAATGCTGAGTTATATGAAATCTAAAGAAATAGATGATCTCAATAATG 250
|||||||||||||||||||||||||||.||||||||.|||||||||||||
BSU05010___ra 201 GATAATGCTGAGTTATATGAAATCTAAGGAAATAGAAGATCTCAATAATG 250
BSNT_00862___ 251 CTTATGAGACTATAAAAGAAATTGAGAAACAAGGGCAATTAACTGGTATG 300
||||||||||||||||||||||||||||.|||||||||||||||||.|||
BSU05010___ra 251 CTTATGAGACTATAAAAGAAATTGAGAAGCAAGGGCAATTAACTGGCATG 300
BSNT_00862___ 301 TTGGAATATTATTTTTACTTTTTTAAGGGTATGTATGAGTTTAGGCGAAA 350
||||||||.||||||||||||||||||||||||||.|||||||||||.||
BSU05010___ra 301 TTGGAATACTATTTTTACTTTTTTAAGGGTATGTACGAGTTTAGGCGTAA 350
BSNT_00862___ 351 AGAATTAACTTCAGCCATAAGTGCCTATCGAATAGCTGAATCAAAGTTGT 400
||||||||.||||||.||||||||.|||||||||||||||||||||||||
BSU05010___ra 351 AGAATTAATTTCAGCGATAAGTGCTTATCGAATAGCTGAATCAAAGTTGT 400
BSNT_00862___ 401 CGGAAGTTGAGGATGAAATAGAAAAAGCAGAGTTTTTTTTCAAAGTGTCC 450
|.||||||||||||||||||||.|||||||||||||||||||||||||||
BSU05010___ra 401 CAGAAGTTGAGGATGAAATAGAGAAAGCAGAGTTTTTTTTCAAAGTGTCC 450
BSNT_00862___ 451 TATGTATATTATTATATGAAACAAACATATTTCTCCATGAATTATGCAAA 500
|||||||||||||||||||||||||||||.||||||||||||||||||||
BSU05010___ra 451 TATGTATATTATTATATGAAACAAACATACTTCTCCATGAATTATGCAAA 500
BSNT_00862___ 501 TCGTGCACTCAAAATATTTAGAGAGTATGAAGAGTATGCGGTCCAAACTG 550
|||||||||||||||||||||||||||||||||.|||||.|||||.||||
BSU05010___ra 501 TCGTGCACTCAAAATATTTAGAGAGTATGAAGAATATGCTGTCCAGACTG 550
BSNT_00862___ 551 TGCGTTGTCAATTTATTGTTGCAGGTAACCTGATCGATTCTTTAGAATAC 600
|||||||||||||||||||.|||||.|||.||||||||||.||.|||||.
BSU05010___ra 551 TGCGTTGTCAATTTATTGTAGCAGGAAACTTGATCGATTCATTGGAATAT 600
BSNT_00862___ 601 GAAAGAGCCTTGGAACAATTTCTGAATTCTTTGGAAATTGCCAAGGGAAG 650
|||||||||||||||||||||.||||.||||||||||||.||||||.|||
BSU05010___ra 601 GAAAGAGCCTTGGAACAATTTTTGAAGTCTTTGGAAATTTCCAAGGAAAG 650
BSNT_00862___ 651 TAACATAGAGCATTTAATTGCAATGTCACACATGAATATTGGGATTTGTT 700
||||||||||||||||||||||||||||||.|||||||||||||||||||
BSU05010___ra 651 TAACATAGAGCATTTAATTGCAATGTCACATATGAATATTGGGATTTGTT 700
BSNT_00862___ 701 ATGATGAATTGAAAGAATATAAAAAGGCTTCACAACATTTAATTTTAGCG 750
||||||||||||||||||||||.|||||||||||||||||||||||||||
BSU05010___ra 701 ATGATGAATTGAAAGAATATAAGAAGGCTTCACAACATTTAATTTTAGCG 750
BSNT_00862___ 751 TTAGAAATTTTCGAAAAATCAAAACATAGTTTCCTAACAAAGACTTTATT 800
|||||||||||.|||||||||||||||||||||.||||||||||||||||
BSU05010___ra 751 TTAGAAATTTTTGAAAAATCAAAACATAGTTTCTTAACAAAGACTTTATT 800
BSNT_00862___ 801 CACTCTAACCTATGTAGAAGCAAAACAACAAAATTATGATGTTGCTTTGA 850
|||||||||||||||||||||||||||||||||||||.||||||||||||
BSU05010___ra 801 CACTCTAACCTATGTAGAAGCAAAACAACAAAATTATAATGTTGCTTTGA 850
BSNT_00862___ 851 TATACTTTAGGAAAGGGCGATTTATTGCCGATAAAAGTGATGATAAGGAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05010___ra 851 TATACTTTAGGAAAGGGCGATTTATTGCCGATAAAAGTGATGATAAGGAA 900
BSNT_00862___ 901 TACTCAGCGAAATTCAAAATATTAGAGGGGTTATTTTTTTCAGATGGCGA 950
|||||||||||||||||||||||||||||.|||||||||||.|||||.||
BSU05010___ra 901 TACTCAGCGAAATTCAAAATATTAGAGGGATTATTTTTTTCTGATGGTGA 950
BSNT_00862___ 951 GACTCAATTAATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGT 1000
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05010___ra 951 GACTCAATTAATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGT 1000
BSNT_00862___ 1001 TTGCAGATGTTGAAAATTTTTCGATTGAAGTCGCTGATTATTTTCATGAA 1050
||||.|||||||||||||||||||||||||||||||||||||||||||||
BSU05010___ra 1001 TTGCTGATGTTGAAAATTTTTCGATTGAAGTCGCTGATTATTTTCATGAA 1050
BSNT_00862___ 1051 CAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||
BSU05010___ra 1051 CAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGC 1100
BSNT_00862___ 1101 AAGACGAAAAATTAAAAAAGGGGAGATTATTAATGAAAATCAGCCGGATT 1150
|||||||||||||||||||||||||||||||.||||||||||||||||||
BSU05010___ra 1101 AAGACGAAAAATTAAAAAAGGGGAGATTATTGATGAAAATCAGCCGGATT 1150
BSNT_00862___ 1151 CTATTGGCAGCAGTGATATTAGGTAG 1176
|||||||||||||||||.|||.||||
BSU05010___ra 1151 CTATTGGCAGCAGTGATTTTAAGTAG 1176
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