Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00842 and BSU04890

See Amino acid alignment / Visit BSNT_00842 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:16
# Commandline: needle
#    -asequence dna-align/BSNT_00842___ydcT.1.22522.seq
#    -bsequence dna-align/BSU04890___ydcT.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00842___ydcT-BSU04890___ydcT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00842___ydcT-BSU04890___ydcT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00842___ydcT
# 2: BSU04890___ydcT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 267
# Identity:     224/267 (83.9%)
# Similarity:   224/267 (83.9%)
# Gaps:           0/267 ( 0.0%)
# Score: 948.0
# 
#
#=======================================

BSNT_00842___      1 ATGTTTAATATTAACCTTTTGAATCAGGCCCGACTAGAGAGTGATTTGGA     50
                     .|||||||||||||.||.|||||||||||||||||.||||||||||||||
BSU04890___yd      1 GTGTTTAATATTAATCTGTTGAATCAGGCCCGACTTGAGAGTGATTTGGA     50

BSNT_00842___     51 GTCTCTTGGCTGTTTAGATATTGCTGAGGAATTGATTGAAAAAATGATGG    100
                     .||.|||||.|||||.|||||||||||||||.||||||||||||||||||
BSU04890___yd     51 TTCCCTTGGGTGTTTGGATATTGCTGAGGAACTGATTGAAAAAATGATGG    100

BSNT_00842___    101 AAGATGTCTTTTACAGTGATGTTGCTCAAAGAGTCATAGTCCAAACTCTT    150
                     |||||||.||||||||||||||.|||||||||.||||.||.|||||.|||
BSU04890___yd    101 AAGATGTTTTTTACAGTGATGTAGCTCAAAGAATCATTGTTCAAACACTT    150

BSNT_00842___    151 GCGGTTATAGATAACGTGAATGCTAAACTTCAAGCCACCTTCAACATACT    200
                     ||.||||||.||||||..|||||.|||||||||||.||.||.|||||..|
BSU04890___yd    151 GCTGTTATAAATAACGCCAATGCAAAACTTCAAGCTACGTTTAACATCTT    200

BSNT_00842___    201 GGAGGGTGAAGACGCTGAGACAGATGAACGAAGTGTTGAATTTGAAGGAA    250
                     .||.|.||||||....||||||||.||||||||.||.||.||||||||||
BSU04890___yd    201 AGAAGATGAAGATATGGAGACAGACGAACGAAGCGTGGAGTTTGAAGGAA    250

BSNT_00842___    251 TATCCTACTATCACTGA    267
                     |...||||||..|.|.|
BSU04890___yd    251 TTAGCTACTACGAATAA    267


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