Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00834 and BSU04839

See Amino acid alignment / Visit BSNT_00834 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:15
# Commandline: needle
#    -asequence dna-align/BSNT_00834.1.22522.seq
#    -bsequence dna-align/BSU04839___ydzL.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00834-BSU04839___ydzL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00834-BSU04839___ydzL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00834
# 2: BSU04839___ydzL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 291
# Identity:     254/291 (87.3%)
# Similarity:   254/291 (87.3%)
# Gaps:          30/291 (10.3%)
# Score: 1242.0
# 
#
#=======================================

BSNT_00834         1 TTGTTACAAAGGTCCAAAATCTCAAACGGGGTGATTTTTATAAACATTGA     50
                                                   ||||||||||||||||||||
BSU04839___yd      1 ------------------------------GTGATTTTTATAAACATTGA     20

BSNT_00834        51 TATAACAAACTCGTTTATGAAAGAAGCTGTTCCTTTAGCCAGACAAATGG    100
                     ||||||||||||||||||||||||||||||.||||||||.||||||||||
BSU04839___yd     21 TATAACAAACTCGTTTATGAAAGAAGCTGTCCCTTTAGCTAGACAAATGG     70

BSNT_00834       101 AAGGTGATTGGATAGCACGAATGAAAATTGCTCTGAATTCAGTCATCATA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
BSU04839___yd     71 AAGGTGATTGGATAGCACGAATGAAAATTGCTCTGAATTCAGTCATTATA    120

BSNT_00834       151 AATCATTATTTAAACCTTCCCTTAACAATTGAAAATGTTAATGAATTACT    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04839___yd    121 AATCATTATTTAAACCTTCCCTTAACAATTGAAAATGTTAATGAATTACT    170

BSNT_00834       201 GCGAAAAGGTGTTTCATATCGCAGGATATGTAAGCATTATGGCATTGGAA    250
                     |||||||||.|||||||||||||||||||||||||||||.||||||||||
BSU04839___yd    171 GCGAAAAGGCGTTTCATATCGCAGGATATGTAAGCATTACGGCATTGGAA    220

BSNT_00834       251 GAAAAGACATTGAAAAGCTGCGGCAATCATCCATAGTGTGA    291
                     |||||||||||||||||||.||||||||||||.||||||||
BSU04839___yd    221 GAAAAGACATTGAAAAGCTTCGGCAATCATCCGTAGTGTGA    261


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