Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00701 and BSU04000

See Amino acid alignment / Visit BSNT_00701 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:17:02
# Commandline: needle
#    -asequence dna-align/BSNT_00701___ycsA.1.22522.seq
#    -bsequence dna-align/BSU04000___ycsA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00701___ycsA-BSU04000___ycsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00701___ycsA-BSU04000___ycsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00701___ycsA
# 2: BSU04000___ycsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1065
# Identity:    1046/1065 (98.2%)
# Similarity:  1046/1065 (98.2%)
# Gaps:           6/1065 ( 0.6%)
# Score: 5178.0
# 
#
#=======================================

BSNT_00701___      1 ------ATGAAACAATTCGAGATTGCGGCAATACCGGGATACGGTGTAGG     44
                           |||||||||||.|||||||||||||||||||||.||||.|||||
BSU04000___yc      1 ATGACGATGAAACAATTTGAGATTGCGGCAATACCGGGAGACGGAGTAGG     50

BSNT_00701___     45 AAAAGAGGTTGTAGCGGCTGCTGAGAAAGTGCTTCATACAGCCGCTGAGG     94
                     ||||||||||||||||||||||||||||||||||||||||||.|||||||
BSU04000___yc     51 AAAAGAGGTTGTAGCGGCTGCTGAGAAAGTGCTTCATACAGCGGCTGAGG    100

BSNT_00701___     95 TACACGGAGGTTTGTCATTCTCATTCACGGCTTTTCCATGGAGCTGTGAT    144
                     ||||||||||||||||||||||||||||.|||||||||||||||||||||
BSU04000___yc    101 TACACGGAGGTTTGTCATTCTCATTCACAGCTTTTCCATGGAGCTGTGAT    150

BSNT_00701___    145 TATTACTTGGAGCACGGCAAAATGATGCCCGAAGATGGAATACATACGCT    194
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    151 TATTACTTGGAGCACGGCAAAATGATGCCCGAAGATGGAATACATACGCT    200

BSNT_00701___    195 TACTCAATTTGAAGCGGTTTTTTTGGGAGCCGTCGGAAATCCGAAGCTGG    244
                     |||||||||||||||.||||||||||||||.|||||||||||||||||||
BSU04000___yc    201 TACTCAATTTGAAGCAGTTTTTTTGGGAGCTGTCGGAAATCCGAAGCTGG    250

BSNT_00701___    245 TTCCCGATCATATATCGTTATGGGGACTGCTGCTGAAAATCCGGAGGGAG    294
                     |||||||||||||||||||||||||.||||||||||||||||||||||||
BSU04000___yc    251 TTCCCGATCATATATCGTTATGGGGGCTGCTGCTGAAAATCCGGAGGGAG    300

BSNT_00701___    295 CTTGAGCTTTCCATTAATATGAGACCCGCCAAACAAATGGCAGGCATTAC    344
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    301 CTTGAGCTTTCCATTAATATGAGACCCGCCAAACAAATGGCAGGCATTAC    350

BSNT_00701___    345 GTCGCCGCTTCTGCATCCAAATGATTTTGACTTCGTGGTGATTCGCGAGA    394
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    351 GTCGCCGCTTCTGCATCCAAATGATTTTGACTTCGTGGTGATTCGCGAGA    400

BSNT_00701___    395 ACAGTGAAGGTGAATACAGTGAAGTCGGCGGGCGCATTCACAGAGGCGAT    444
                     |||||||||||||||||||||||||.||||||||||||||||||||||||
BSU04000___yc    401 ACAGTGAAGGTGAATACAGTGAAGTTGGCGGGCGCATTCACAGAGGCGAT    450

BSNT_00701___    445 GATGAAATCGCCATCCAGAATGCCGTGTTTACGAGAAAAGCGACAGAACG    494
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    451 GATGAAATCGCCATCCAGAATGCCGTGTTTACGAGAAAAGCGACAGAACG    500

BSNT_00701___    495 TGTCATGCGCTTTGCCTTCGAATTGGCGAAAAAACGGCGCAGCCATGTGA    544
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    501 TGTCATGCGCTTTGCCTTCGAATTGGCGAAAAAACGGCGCAGCCATGTGA    550

BSNT_00701___    545 CAAGCGCCACAAAGTCTAACGGCATTTATCATGCGATGCCGTTTTGGGAT    594
                     |||||||||||||||||||||||||||||||.||||||||||||||||||
BSU04000___yc    551 CAAGCGCCACAAAGTCTAACGGCATTTATCACGCGATGCCGTTTTGGGAT    600

BSNT_00701___    595 GAAGTCTTTCAGCAGACAGCCGCTGATTATAGCGGAATCGAAACATCATC    644
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    601 GAAGTCTTTCAGCAGACAGCCGCTGATTATAGCGGAATCGAAACATCATC    650

BSNT_00701___    645 TCAGCATATTGATGCGCTGGCCGCTTTTTTTGTGACGCGTCCGGAAACGT    694
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    651 TCAGCATATTGATGCGCTGGCCGCTTTTTTTGTGACGCGTCCGGAAACGT    700

BSNT_00701___    695 TTGATGTCATTGTGGCGAGCAACTTGTTCGGTGATATTTTAACCGACATC    744
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    701 TTGATGTCATTGTGGCGAGCAACTTGTTCGGTGATATTTTAACCGACATC    750

BSNT_00701___    745 AGCTCAAGCCTGATGGGAAGCATCGGCATTGCGCCTTCTGCGAACATCAA    794
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    751 AGCTCAAGCCTGATGGGAAGCATCGGCATTGCGCCTTCTGCGAACATCAA    800

BSNT_00701___    795 TCCATCCGGCAAATATCCGTCCATGTTTGAACCGGTTCACGGCTCAGCTC    844
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    801 TCCATCCGGCAAATATCCGTCCATGTTTGAACCGGTTCACGGCTCAGCTC    850

BSNT_00701___    845 CTGACATTGCCGGACAGGGCCTTGCCAATCCGATTGGCCAGATTTGGACA    894
                     ||||||||||||||||||||||||||||||||||.|||||||||||||||
BSU04000___yc    851 CTGACATTGCCGGACAGGGCCTTGCCAATCCGATCGGCCAGATTTGGACA    900

BSNT_00701___    895 GCGAAGCTGATGCTCGACCACTTCGGAGAGGAAGAGCTGGGGGCGAAAAT    944
                     |||||||||||||||||||||||||||||||||||..|||||||||||||
BSU04000___yc    901 GCGAAGCTGATGCTCGACCACTTCGGAGAGGAAGAATTGGGGGCGAAAAT    950

BSNT_00701___    945 TCTGGATGTAATGGAGCAAGTGACTGCCGACGGCATCAAAACACGCGACA    994
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc    951 TCTGGATGTAATGGAGCAAGTGACTGCCGACGGCATCAAAACACGCGACA   1000

BSNT_00701___    995 TTGGGGGACAAAGCACAACGGCTGAGGTCACTGATGAAATCTGTTCGCGC   1044
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU04000___yc   1001 TTGGGGGACAAAGCACAACGGCTGAGGTCACTGATGAAATCTGTTCGCGC   1050

BSNT_00701___   1045 TTAAGAAAGCTCTGA   1059
                     |||||||||||||||
BSU04000___yc   1051 TTAAGAAAGCTCTGA   1065


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