Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00561 and BSU03160

See Amino acid alignment / Visit BSNT_00561 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:16:44
# Commandline: needle
#    -asequence dna-align/BSNT_00561___ycgJ.1.22522.seq
#    -bsequence dna-align/BSU03160___ycgJ.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00561___ycgJ-BSU03160___ycgJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00561___ycgJ-BSU03160___ycgJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00561___ycgJ
# 2: BSU03160___ycgJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 762
# Identity:     746/762 (97.9%)
# Similarity:   746/762 (97.9%)
# Gaps:           0/762 ( 0.0%)
# Score: 3666.0
# 
#
#=======================================

BSNT_00561___      1 ATGACAAATGAAACACCGTTTTCTATAAACGCCGAGATGTATCGGGATGA     50
                     |||||||||||||||||||||||||.||||||||||||||||||||||||
BSU03160___yc      1 ATGACAAATGAAACACCGTTTTCTAAAAACGCCGAGATGTATCGGGATGA     50

BSNT_00561___     51 AAAGGTATTTGCCGAGGGGGAAGATTTGGGATTGATGATCAAAACGGCGG    100
                     ||||||||||||||||||||||||||||||.||||||||||||||.||||
BSU03160___yc     51 AAAGGTATTTGCCGAGGGGGAAGATTTGGGGTTGATGATCAAAACAGCGG    100

BSNT_00561___    101 AATGCCGAGCAGAGCATCGGGTGCTGGATATCGGAGCGGGCGCCGGCCAT    150
                     |||||||.|||||||||||.|||||||||||.||||||||||||||||||
BSU03160___yc    101 AATGCCGGGCAGAGCATCGAGTGCTGGATATAGGAGCGGGCGCCGGCCAT    150

BSNT_00561___    151 ACGGCGCTGGCATTTTCTCCTTATGTACAGGAGTGCATCGGTGTTGATGC    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03160___yc    151 ACGGCGCTGGCATTTTCTCCTTATGTACAGGAGTGCATCGGTGTTGATGC    200

BSNT_00561___    201 GACGAAAGAGATGGTTGAGGTTGCGTCCTCCTTCGCGCAAGAAAAAGGAG    250
                     .|||||||||||||||||||||||||||||||||||||||||||||||||
BSU03160___yc    201 AACGAAAGAGATGGTTGAGGTTGCGTCCTCCTTCGCGCAAGAAAAAGGAG    250

BSNT_00561___    251 CTGAAAACGTACGCTTTCAGCAAGGAACGGCAGAGTCACTCCCCTTCCCC    300
                     .|||||||||||||||||||||||||||||||||||||||||||||||||
BSU03160___yc    251 TTGAAAACGTACGCTTTCAGCAAGGAACGGCAGAGTCACTCCCCTTCCCC    300

BSNT_00561___    301 GACGATTCATTTGACATCATCACCTGCCGATACGCAGCCCACCATTTTTC    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03160___yc    301 GACGATTCATTTGACATCATCACCTGCCGATACGCAGCCCACCATTTTTC    350

BSNT_00561___    351 AGATGTCCGCAAAGCTGTCAGCGAGGTTGCACGCGTACTAAAACAGGACG    400
                     |||||||||||||||||||||.||||||||||||||||||||||||||||
BSU03160___yc    351 AGATGTCCGCAAAGCTGTCAGAGAGGTTGCACGCGTACTAAAACAGGACG    400

BSNT_00561___    401 GACATTTTCTCTTAGTTGATCATTACGCGCCTGAAGATCCCGTTCTTGAT    450
                     |||.||||||||||||||||||||||||||||||||||||||||||||||
BSU03160___yc    401 GACGTTTTCTCTTAGTTGATCATTACGCGCCTGAAGATCCCGTTCTTGAT    450

BSNT_00561___    451 GAGTTTGTCAATCATTTGAACCGGCTTCGAGACCCTTCCCATGTTCGAGA    500
                     |||||||||||||||||||||||||||||||||||||||||||||||.||
BSU03160___yc    451 GAGTTTGTCAATCATTTGAACCGGCTTCGAGACCCTTCCCATGTTCGTGA    500

BSNT_00561___    501 AAGCTCATTATCAGAATGGCAGGCGATGTTCAGCGCCAATCAACTGGCCT    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03160___yc    501 AAGCTCATTATCAGAATGGCAGGCGATGTTCAGCGCCAATCAACTGGCCT    550

BSNT_00561___    551 ATCAAGACATCCAAAAGTGGAATTTGCCGATTCAATACGATAGCTGGATC    600
                     ||||||||||||||||||||||.|||||||||||||||||||||||||||
BSU03160___yc    551 ATCAAGACATCCAAAAGTGGAACTTGCCGATTCAATACGATAGCTGGATC    600

BSNT_00561___    601 AAACGAGGCGGAACTCCCGCTGACCGGGAAAAACAAATCATTGCCCACTT    650
                     ||||||||||||||.|||||||||||.|||||||||||||||.|||||||
BSU03160___yc    601 AAACGAGGCGGAACCCCCGCTGACCGAGAAAAACAAATCATTACCCACTT    650

BSNT_00561___    651 GAACCACGCATCAGACGAAGCACGCGACACGTTCTGTATTACATTGAACC    700
                     |||.||||||||||||||||||||||||||||||||||||||||||||||
BSU03160___yc    651 GAATCACGCATCAGACGAAGCACGCGACACGTTCTGTATTACATTGAACC    700

BSNT_00561___    701 AAAACGGACAGCCCATCTCCTTTTGTTTAAAAGCGATTTTGATACAAGGG    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU03160___yc    701 AAAACGGACAGCCCATCTCCTTTTGTTTAAAAGCGATTTTGATACAAGGG    750

BSNT_00561___    751 ATAAAACGATAA    762
                     ||||||||||||
BSU03160___yc    751 ATAAAACGATAA    762


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.