Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00342 and BSU01730

See Amino acid alignment / Visit BSNT_00342 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:16:21
# Commandline: needle
#    -asequence dna-align/BSNT_00342___sigW.1.22522.seq
#    -bsequence dna-align/BSU01730___sigW.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00342___sigW-BSU01730___sigW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00342___sigW-BSU01730___sigW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00342___sigW
# 2: BSU01730___sigW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 564
# Identity:     560/564 (99.3%)
# Similarity:   560/564 (99.3%)
# Gaps:           0/564 ( 0.0%)
# Score: 2784.0
# 
#
#=======================================

BSNT_00342___      1 ATGGAAATGATGATTAAAAAAAGAATTAAACAAGTCAAAAAAGGCGACCA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01730___si      1 ATGGAAATGATGATTAAAAAAAGAATTAAACAAGTCAAAAAAGGCGACCA     50

BSNT_00342___     51 GAATGCATTTGCGGACATCGTAGATATTTACAAAGATAAAATTTATCAGC    100
                     |.||||||||||||||||||||||||||||||||||||||||||||||||
BSU01730___si     51 GGATGCATTTGCGGACATCGTAGATATTTACAAAGATAAAATTTATCAGC    100

BSNT_00342___    101 TTTGCTACCGTATGCTTGGCAATGTGCATGAGGCGGAGGATATTGCACAG    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01730___si    101 TTTGCTACCGTATGCTTGGCAATGTGCATGAGGCGGAGGATATTGCACAG    150

BSNT_00342___    151 GAAGCTTTCATCAGAGCGTACGTTAATATCGACAGTTTTGATATTAACCG    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01730___si    151 GAAGCTTTCATCAGAGCGTACGTTAATATCGACAGTTTTGATATTAACCG    200

BSNT_00342___    201 GAAATTTTCAACTTGGCTTTATCGAATCGCGACCAATTTGACCATTGACC    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01730___si    201 GAAATTTTCAACTTGGCTTTATCGAATCGCGACCAATTTGACCATTGACC    250

BSNT_00342___    251 GCATTCGCAAAAAGAAGCCGGATTATTACCTCGATGCAGAGGTGGCTGGT    300
                     ||||||||||||||||||||||||||||||||||.|||||||||||||||
BSU01730___si    251 GCATTCGCAAAAAGAAGCCGGATTATTACCTCGACGCAGAGGTGGCTGGT    300

BSNT_00342___    301 ACGGAAGGCTTGACCATGTATTCTCAAATCGCCGCAGATGGTGTTTTGCC    350
                     |||||||||||||||||||||||||||||||.||||||||||||||||||
BSU01730___si    301 ACGGAAGGCTTGACCATGTATTCTCAAATCGTCGCAGATGGTGTTTTGCC    350

BSNT_00342___    351 TGAAGATGCAGTTGTGTCGCTGGAGCTCTCAAACACGATACAGCAGAAAA    400
                     |||||||||||||||.||||||||||||||||||||||||||||||||||
BSU01730___si    351 TGAAGATGCAGTTGTATCGCTGGAGCTCTCAAACACGATACAGCAGAAAA    400

BSNT_00342___    401 TTTTAAAGCTTCCTGACAAATACAGAACAGTCATCGTATTAAAGTATATT    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01730___si    401 TTTTAAAGCTTCCTGACAAATACAGAACAGTCATCGTATTAAAGTATATT    450

BSNT_00342___    451 GACGAACTCTCATTAATTGAAATCGGGGAGATTCTAAACATTCCTGTGGG    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01730___si    451 GACGAACTCTCATTAATTGAAATCGGGGAGATTCTAAACATTCCTGTGGG    500

BSNT_00342___    501 GACTGTGAAAACGCGGATTCACAGAGGCAGAGAGGCTCTTAGAAAACAAT    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01730___si    501 GACTGTGAAAACGCGGATTCACAGAGGCAGAGAGGCTCTTAGAAAACAAT    550

BSNT_00342___    551 TAAGGGATCTTTAA    564
                     ||||||||||||||
BSU01730___si    551 TAAGGGATCTTTAA    564


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