Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00260 and BSU01520

See Amino acid alignment / Visit BSNT_00260 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:16:17
# Commandline: needle
#    -asequence dna-align/BSNT_00260___ybaK.1.22522.seq
#    -bsequence dna-align/BSU01520___ybaK.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00260___ybaK-BSU01520___ybaK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00260___ybaK-BSU01520___ybaK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00260___ybaK
# 2: BSU01520___ybaK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 444
# Identity:     437/444 (98.4%)
# Similarity:   437/444 (98.4%)
# Gaps:           0/444 ( 0.0%)
# Score: 2157.0
# 
#
#=======================================

BSNT_00260___      1 ATGGCAGAAGTACTGTCTTTTATGGATGTGAAACGCCAAAAGGATTTTGA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01520___yb      1 ATGGCAGAAGTACTGTCTTTTATGGATGTGAAACGCCAAAAGGATTTTGA     50

BSNT_00260___     51 ATTAGAAAAGAACTTGCTCAAAGAACTCTCTCTGAGACAAATTATCCAGT    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01520___yb     51 ATTAGAAAAGAACTTGCTCAAAGAACTCTCTCTGAGACAAATTATCCAGT    100

BSNT_00260___    101 CTGTTAAGGATTGTTTAGAACCATTATTTCCATTTTTACATGATGAACGA    150
                     ||||||||||||||||.|||||||||||||||||||||||||||||||||
BSU01520___yb    101 CTGTTAAGGATTGTTTGGAACCATTATTTCCATTTTTACATGATGAACGA    150

BSNT_00260___    151 GATATTATTACCGAAGGCTGTATTGATTTTGCTATAGAAGCCTATTTGTT    200
                     ||||||||||||||||||||||||||||||||.||.|||||.||||||||
BSU01520___yb    151 GATATTATTACCGAAGGCTGTATTGATTTTGCGATTGAAGCTTATTTGTT    200

BSNT_00260___    201 AGGCGGGCGTTTTGGGATATTCGGCTATTACGGAGAATCCATGCAGAGTA    250
                     |||||||||||||||||||||||||||||||||||||||.||||||||||
BSU01520___yb    201 AGGCGGGCGTTTTGGGATATTCGGCTATTACGGAGAATCAATGCAGAGTA    250

BSNT_00260___    251 TCAGTGCCCGCTCTGCAAGAGAAGAAGAAGAGCTACGTATGGAGTTTTTT    300
                     ||||||||||||||||||||||||||||||||||.|||||||||||||||
BSU01520___yb    251 TCAGTGCCCGCTCTGCAAGAGAAGAAGAAGAGCTGCGTATGGAGTTTTTT    300

BSNT_00260___    301 GATTATCTCTATAATTGGATACACGAGCAATACGCAACATTTGATAAAAA    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU01520___yb    301 GATTATCTCTATAATTGGATACACGAGCAATACGCAACATTTGATAAAAA    350

BSNT_00260___    351 CACGGTTTATGAAGCGGCACGCAAGTTCATTAAAGATTGGTGGACAGCAG    400
                     |||.||||||||||||||||||||||||||||||||||||||||||||||
BSU01520___yb    351 CACTGTTTATGAAGCGGCACGCAAGTTCATTAAAGATTGGTGGACAGCAG    400

BSNT_00260___    401 GGTTTGTTCAAAGAGAAAAACAGTGTAAGCTTCGCATGCGGTAA    444
                     ||||||||||||||||||||||||||||||||||||||||||||
BSU01520___yb    401 GGTTTGTTCAAAGAGAAAAACAGTGTAAGCTTCGCATGCGGTAA    444


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.