Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00078 and BSU00420

See Amino acid alignment / Visit BSNT_00078 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:15:56
# Commandline: needle
#    -asequence dna-align/BSNT_00078___ksgA.1.22522.seq
#    -bsequence dna-align/BSU00420___ksgA.2.22522.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00078___ksgA-BSU00420___ksgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00078___ksgA-BSU00420___ksgA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00078___ksgA
# 2: BSU00420___ksgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 879
# Identity:     879/879 (100.0%)
# Similarity:   879/879 (100.0%)
# Gaps:           0/879 ( 0.0%)
# Score: 4395.0
# 
#
#=======================================

BSNT_00078___      1 ATGAATAAAGATATTGCGACACCGATTAGAACGAAAGAGATACTGAAGAA     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks      1 ATGAATAAAGATATTGCGACACCGATTAGAACGAAAGAGATACTGAAGAA     50

BSNT_00078___     51 ATACGGTTTTTCTTTTAAAAAGAGCTTAGGACAGAATTTCTTAATTGATA    100
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks     51 ATACGGTTTTTCTTTTAAAAAGAGCTTAGGACAGAATTTCTTAATTGATA    100

BSNT_00078___    101 CGAACATTTTAAACAGAATTGTTGATCACGCGGAAGTGACGGAGAAAACA    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    101 CGAACATTTTAAACAGAATTGTTGATCACGCGGAAGTGACGGAGAAAACA    150

BSNT_00078___    151 GGTGTCATTGAAATCGGCCCGGGAATCGGGGCTTTAACCGAACAGCTTGC    200
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    151 GGTGTCATTGAAATCGGCCCGGGAATCGGGGCTTTAACCGAACAGCTTGC    200

BSNT_00078___    201 CAAGCGGGCGAAAAAGGTCGTGGCATTTGAGATTGACCAGCGATTATTGC    250
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    201 CAAGCGGGCGAAAAAGGTCGTGGCATTTGAGATTGACCAGCGATTATTGC    250

BSNT_00078___    251 CGATTCTGAAGGATACACTGTCACCTTACGAAAATGTCACTGTCATTCAT    300
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    251 CGATTCTGAAGGATACACTGTCACCTTACGAAAATGTCACTGTCATTCAT    300

BSNT_00078___    301 CAGGACGTGTTAAAGGCTGATGTCAAATCAGTCATTGAAGAACAATTTCA    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    301 CAGGACGTGTTAAAGGCTGATGTCAAATCAGTCATTGAAGAACAATTTCA    350

BSNT_00078___    351 AGATTGTGATGAGATCATGGTAGTTGCCAACCTTCCTTATTACGTAACAA    400
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    351 AGATTGTGATGAGATCATGGTAGTTGCCAACCTTCCTTATTACGTAACAA    400

BSNT_00078___    401 CACCGATTATCATGAAACTGCTTGAAGAACATCTTCCGCTGAAAGGGATT    450
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    401 CACCGATTATCATGAAACTGCTTGAAGAACATCTTCCGCTGAAAGGGATT    450

BSNT_00078___    451 GTGGTTATGCTGCAAAAAGAAGTGGCTGAGCGCATGGCGGCTGATCCTTC    500
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    451 GTGGTTATGCTGCAAAAAGAAGTGGCTGAGCGCATGGCGGCTGATCCTTC    500

BSNT_00078___    501 ATCTAAGGAATACGGCTCGCTTTCAATCGCGGTGCAGTTTTATACAGAAG    550
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    501 ATCTAAGGAATACGGCTCGCTTTCAATCGCGGTGCAGTTTTATACAGAAG    550

BSNT_00078___    551 CCAAAACGGTGATGATCGTCCCGAAAACCGTATTTGTTCCTCAGCCTAAT    600
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    551 CCAAAACGGTGATGATCGTCCCGAAAACCGTATTTGTTCCTCAGCCTAAT    600

BSNT_00078___    601 GTCGATTCCGCAGTCATTCGTCTGATTCTCCGAGACGGCCCGGCAGTGGA    650
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    601 GTCGATTCCGCAGTCATTCGTCTGATTCTCCGAGACGGCCCGGCAGTGGA    650

BSNT_00078___    651 CGTGGAAAACGAATCCTTTTTCTTTCAGCTCATCAAGGCAAGCTTTGCAC    700
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    651 CGTGGAAAACGAATCCTTTTTCTTTCAGCTCATCAAGGCAAGCTTTGCAC    700

BSNT_00078___    701 AGCGCCGTAAAACGCTGCTCAATAACTTAGTTAACAATCTGCCTGAAGGA    750
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    701 AGCGCCGTAAAACGCTGCTCAATAACTTAGTTAACAATCTGCCTGAAGGA    750

BSNT_00078___    751 AAAGCACAAAAATCAACGATTGAACAAGTGCTCGAAGAAACAAATATTGA    800
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    751 AAAGCACAAAAATCAACGATTGAACAAGTGCTCGAAGAAACAAATATTGA    800

BSNT_00078___    801 CGGTAAGCGCCGAGGTGAATCCCTGTCTATTGAGGAATTCGCAGCGCTGT    850
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
BSU00420___ks    801 CGGTAAGCGCCGAGGTGAATCCCTGTCTATTGAGGAATTCGCAGCGCTGT    850

BSNT_00078___    851 CTAACGGATTGTATAAAGCCCTTTTCTAA    879
                     |||||||||||||||||||||||||||||
BSU00420___ks    851 CTAACGGATTGTATAAAGCCCTTTTCTAA    879


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.