Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06287 and BPUM_3732
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:43
# Commandline: needle
# -asequence dna-align/BSNT_06287___gidA.1.24716.seq
# -bsequence dna-align/BPUM_3732___gidA2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06287___gidA-BPUM_3732___gidA2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06287___gidA-BPUM_3732___gidA2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06287___gidA
# 2: BPUM_3732___gidA2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1907
# Identity: 1455/1907 (76.3%)
# Similarity: 1455/1907 (76.3%)
# Gaps: 40/1907 ( 2.1%)
# Score: 5512.0
#
#
#=======================================
BSNT_06287___ 1 ATGGGGTATGAAGCAGGCCAATACGATGTGATTGTGATTGGCGCCGGGCA 50
|||||.||||||||.|||.|.||.||.||.||.||..|.||.|||||.||
BPUM_3732___g 1 ATGGGTTATGAAGCTGGCAATTATGACGTCATCGTCGTGGGTGCCGGTCA 50
BSNT_06287___ 51 TGCCGGTGTTGAGGCTGCCCTCGCATCTGCACGCCAAGGCGCCAAAACGC 100
|||.||.|||||||||||.||.||.||||||.|.||.|||||.|||||.|
BPUM_3732___g 51 TGCTGGGGTTGAGGCTGCTCTTGCTTCTGCAAGACAGGGCGCTAAAACAC 100
BSNT_06287___ 101 TTGTCTTGACCATCAACCTAGATATGGTTGCATTTATGCCATGTAATCCG 150
||||.|||||.||||||||.|||||||||||.||||||||||||||||||
BPUM_3732___g 101 TTGTATTGACTATCAACCTCGATATGGTTGCTTTTATGCCATGTAATCCG 150
BSNT_06287___ 151 TCTGTCGGCGGCCCCGCAAAAGGGATTGTCGTCCGCGAAATTGACGCGCT 200
||.||.|||||.||.|||||||||||||||||..|.||||||||.||.||
BPUM_3732___g 151 TCCGTAGGCGGTCCTGCAAAAGGGATTGTCGTTAGAGAAATTGATGCACT 200
BSNT_06287___ 201 CGGCGGAGAAATGGGAAGAAACATCGATAAAACGCATATTCAAATGAGAA 250
.|||||||||||||.|.||||.||.|||||.|||||||||||||||.|.|
BPUM_3732___g 201 GGGCGGAGAAATGGCACGAAATATAGATAAGACGCATATTCAAATGCGCA 250
BSNT_06287___ 251 TGCTGAATACAGGAAAAGGTCCTGCGGTTCGTGCATTGCGTGCGCAAGCA 300
||.|||||||.||.|||||.|||||.||||||||.||..|.|||||||||
BPUM_3732___g 251 TGTTGAATACGGGGAAAGGACCTGCTGTTCGTGCTTTAAGAGCGCAAGCA 300
BSNT_06287___ 301 GACAAATTCCAATATCAGCACGAAATGAAAAATACGCTTGAAAAAGAACC 350
|||||.||||||||||||||.|||||||||||.||..|.|||||.|||||
BPUM_3732___g 301 GACAAGTTCCAATATCAGCATGAAATGAAAAAAACAATGGAAAATGAACC 350
BSNT_06287___ 351 AAACTTAACATTGCTGCAAGGAATTGTGGAGCGGCTGATCGTTGAAGACG 400
.|||.|.|||.||||||||||.||.|||||.|...|.||.||..||||.|
BPUM_3732___g 351 GAACCTGACAATGCTGCAAGGTATGGTGGATCATTTAATTGTAAAAGATG 400
BSNT_06287___ 401 GCGAATGCCGAGGCGTTATTACACAAACCGGCGCACATTATCGTGCGAAA 450
..|||||...|||.|||.||||||||||.||.|||.|.|||||||||||.
BPUM_3732___g 401 ATGAATGTAAAGGTGTTGTTACACAAACAGGGGCAAACTATCGTGCGAAG 450
BSNT_06287___ 451 GCAGTTGTCATGACGACAGGGACATATTTAAGAGGACGTATCATTCTTGG 500
.|.|||||..|.|||||.||.||.|..||||.|||.||.||.|||.|.||
BPUM_3732___g 451 TCTGTTGTATTAACGACGGGAACTTTCTTAAAAGGTCGCATTATTTTAGG 500
BSNT_06287___ 501 TGATCTGTCTTACTCAAGCGGCCCAAATAACCAGCAGCCTTCTATTAAGC 550
.|||||.||.||.|||||.||.||.||||||||||||||.|||||.||..
BPUM_3732___g 501 GGATCTATCGTATTCAAGTGGTCCTAATAACCAGCAGCCATCTATCAAAT 550
BSNT_06287___ 551 TTTCTGAGC---------ATTTGGAGGAACTTGGTTTTGACCTTGTTCGT 591
|.||.||.| |||| |||| ||.|.|||| |||||.
BPUM_3732___g 551 TATCGGATCACCTAGCAGATTT--AGGA--TTCGATTTG-----GTTCGC 591
BSNT_06287___ 592 TTTAAAACAGGTACGCCGCCTCGCGTTAAAAGCGACACGATTGATTACAG 641
|||||||||||.||.||.|||||.||.||.||..||.|||||||.||.||
BPUM_3732___g 592 TTTAAAACAGGAACACCTCCTCGAGTGAATAGTCACTCGATTGACTATAG 641
BSNT_06287___ 642 CAAAACGGAAATTCAGCCTGGTGACGATGTGCCTCGCGCTTTCTCATATG 691
.|||||.||||||||.||.|||||.||.||.||.||.||.||.||.||||
BPUM_3732___g 642 TAAAACAGAAATTCAACCAGGTGATGACGTTCCGCGGGCGTTTTCCTATG 691
BSNT_06287___ 692 AAACAGTGGAATATATCACAGATCAGCTCCCTTGCTGGCTGACATATACA 741
||||.||.||||||||.|||||.||.|||||.||||||.|.|||||||||
BPUM_3732___g 692 AAACGGTTGAATATATTACAGACCAACTCCCATGCTGGTTAACATATACA 741
BSNT_06287___ 742 AGCCCTGAGACACATGAGATTATTGA-CAGCAACCTGCACCGTTCACCGA 790
||....||.||||||.|.|||||||| .|| ||.||.||||||||.||.|
BPUM_3732___g 742 AGTTTAGAAACACATCAAATTATTGATGAG-AATCTTCACCGTTCTCCAA 790
BSNT_06287___ 791 TGTATTCCGGTATGATCAAAGGTACGGGCCCAAGATACTGCCCATCCATT 840
|||||||.||||||||.|||||.||.||.||.|||||||||||.||||||
BPUM_3732___g 791 TGTATTCAGGTATGATTAAAGGAACTGGTCCTAGATACTGCCCTTCCATT 840
BSNT_06287___ 841 GAAGATAAAGTTGTACGATTTAATGATAAACCGCGTCACCAGATCTTCCT 890
|||||.|||||.||.||.||.|||||.||||||.|.||.||.||.|||.|
BPUM_3732___g 841 GAAGACAAAGTGGTTCGTTTCAATGACAAACCGAGACATCAAATTTTCTT 890
BSNT_06287___ 891 TGAGCCGGAAGGCAGAAATACACAGGAAGTCTATGTCCAAGGTTTATCTA 940
.|||||.|||||..|.|||||.||||||||.|||||.|||||.||.||||
BPUM_3732___g 891 AGAGCCAGAAGGTCGTAATACGCAGGAAGTTTATGTTCAAGGATTGTCTA 940
BSNT_06287___ 941 CAAGTCTTCCAGAAGACGTACAGCAAAGAATGCTTGCAACGATTCCTGGA 990
||||||||||.||.||.||||||||..|.||||||.||||.||.||.|||
BPUM_3732___g 941 CAAGTCTTCCGGAGGATGTACAGCAGCGCATGCTTTCAACCATCCCAGGA 990
BSNT_06287___ 991 CTTGAAAACGTGCAAATGATGAGAGCCGGCTATGCGATCGAGTATGATGC 1040
||.||.||.||.||||||||||||||.||.|||||.||.|||||||||||
BPUM_3732___g 991 CTCGAGAATGTACAAATGATGAGAGCGGGTTATGCCATTGAGTATGATGC 1040
BSNT_06287___ 1041 AATCGTACCGACACAGCTCTGGCCGACACTTGAAACAAAAAAAATCACAA 1090
|||.||.||.||.|||.|.|||||.|||||.||.||.||.|||||
BPUM_3732___g 1041 AATTGTGCCTACTCAGTTGTGGCCTACACTCGAGACGAAGAAAAT----- 1085
BSNT_06287___ 1091 ACCTT--------TACACTGCAGGCCAAATTAACGGAACTTCCGGTTATG 1132
|| ||.||.||.|||||||||||.||.||.||.||.||||
BPUM_3732___g 1086 ---TTCTGGATTATATACAGCTGGCCAAATTAATGGTACGTCTGGCTATG 1132
BSNT_06287___ 1133 AAGAAGCTGCGGGACAAGGGATTATGGCGGGAATCAATGCAGGACGAAAA 1182
|.|||||.||.||.|||||.||||||||.||.||.|||||||||.|||||
BPUM_3732___g 1133 AGGAAGCAGCAGGTCAAGGAATTATGGCAGGTATTAATGCAGGAAGAAAA 1182
BSNT_06287___ 1183 GCGCTTGGAAAAGAAGAAGTGATTTTAAGCCGTTCTGACGCCTATATTGG 1232
||..|.||.|||||||||||.|||||||||||.|||||.||.|||||.||
BPUM_3732___g 1183 GCATTGGGTAAAGAAGAAGTCATTTTAAGCCGATCTGATGCATATATCGG 1232
BSNT_06287___ 1233 TGTTCTGATTGATGACCTTGTGACAAAAGGTACCAATGAGCCATATCGTC 1282
||||||.||||||||.|||||.|||||.||.||.|||||.||.||.||||
BPUM_3732___g 1233 TGTTCTCATTGATGATCTTGTCACAAAGGGAACAAATGAACCTTACCGTC 1282
BSNT_06287___ 1283 TTTTGACATCACGTGCGGAATACAGATTGCTGCTTCGCCATGACAATGCT 1332
||||.|||||.|||||.||.||..|.|||||.|||||.|||||||||||.
BPUM_3732___g 1283 TTTTAACATCCCGTGCAGAGTATCGTTTGCTTCTTCGTCATGACAATGCG 1332
BSNT_06287___ 1333 GATTTGCGTCTGACAGAAATCGGACACCGCATTGGATTGATTTCTGATGA 1382
|||||..|..|.||.|||.|.||..|.|..||||||||.||.|||.|.||
BPUM_3732___g 1333 GATTTAAGATTAACTGAACTTGGCTATCATATTGGATTAATATCTCAAGA 1382
BSNT_06287___ 1383 GCGCTATGC--GGCTTTTGAGAAGAAAAAAGCGGCGATCGAGGCGGAGAA 1430
..| ||.| .||.||..||.|||||||||..||.||.||.||.|||||
BPUM_3732___g 1383 AAG--ATTCCAAGCATTCCAGCAGAAAAAAGAAGCCATTGAAGCAGAGAA 1430
BSNT_06287___ 1431 AAAACGTCTTCATTCTGTAATTATCAAGCCGTCTCCGGAAAATCAAGAAT 1480
|||||||.|..||||.||.||.|||||.||..|..|.||.|..|||||.|
BPUM_3732___g 1431 AAAACGTTTATATTCAGTCATCATCAAACCTACAGCTGAGACACAAGAGT 1480
BSNT_06287___ 1481 ATATCCGTTCTCTTGGCGGAAGCGAATTGAAAGATGGAGTTCGCGGCACA 1530
.|||.|||||.|||||.|||||.||..||||.||.||..||||.|..|..
BPUM_3732___g 1481 TTATTCGTTCACTTGGTGGAAGTGAGCTGAAGGACGGTATTCGTGCTAGT 1530
BSNT_06287___ 1531 GACTTGATGAAGCGTCCTGAAATGAACTATGAAACAGTCACAAAACTGGC 1580
||.||||||||||||||.|||||||||||||||.||||....|.|.|.||
BPUM_3732___g 1531 GATTTGATGAAGCGTCCAGAAATGAACTATGAATCAGTTGTGAGATTAGC 1580
BSNT_06287___ 1581 GCCGCCAGAAGTGCCAGTTCCTCAAGACGTGGCAGAACAAGTAGAAATCC 1630
.||..|.|||...||..|||||...||.|||...||.||.|||||.||.|
BPUM_3732___g 1581 TCCTGCTGAAACTCCGCTTCCTTCTGATGTGTGTGAGCAGGTAGAGATTC 1630
BSNT_06287___ 1631 AAGTGAAATATGAAGGATATATTGAAAAATCTCTTCAGCAAGTGGAAAAA 1680
||.|.|||||.|||||.|||||.|||||.||.||.||.|||||.|||||.
BPUM_3732___g 1631 AAATTAAATACGAAGGTTATATCGAAAAGTCACTCCAACAAGTTGAAAAG 1680
BSNT_06287___ 1681 CTGAAGAAGATGGAAAATAAAAAAATTCCAGATCGAATTGATTATGACGC 1730
|||||.||||||||.||||||||.|||||.|||||.|||||||||||.||
BPUM_3732___g 1681 CTGAAAAAGATGGAGAATAAAAAGATTCCTGATCGTATTGATTATGATGC 1730
BSNT_06287___ 1731 AATTAAGGGGATTGCGACCGAGGCGCGTCAAAAACTGAAAAATGTACGGC 1780
.||.||.||.|||||.||.||.|||...|||||..|||||.|.||.||.|
BPUM_3732___g 1731 CATCAAAGGAATTGCAACTGAAGCGAAACAAAAGTTGAAAGAAGTCCGAC 1780
BSNT_06287___ 1781 CTTTGTCTGTTGCCCAAGCTTCCCGCATTTCCGGTGTAAACCCGGCGGAC 1830
|..|.||||||||.||.|||||.||.|||||.||.||.|||||.||.||.
BPUM_3732___g 1781 CGCTTTCTGTTGCACAGGCTTCTCGTATTTCAGGCGTTAACCCTGCTGAT 1830
BSNT_06287___ 1831 ATTTCAATTCTATTGGTGTATTTAGAGCAGGGACGCATTGCGAAGATAGC 1880
|||||.||.||.||.||.|||||||||||||||||.||||||||||||||
BPUM_3732___g 1831 ATTTCTATCCTTTTAGTATATTTAGAGCAGGGACGTATTGCGAAGATAGC 1880
BSNT_06287___ 1881 CGAATAG 1887
.||||||
BPUM_3732___g 1881 AGAATAG 1887
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