Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06283 and BPUM_3730

See Amino acid alignment / Visit BSNT_06283 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:43
# Commandline: needle
#    -asequence dna-align/BSNT_06283___yyaA.1.24716.seq
#    -bsequence dna-align/BPUM_3730___spoOJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06283___yyaA-BPUM_3730___spoOJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06283___yyaA-BPUM_3730___spoOJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06283___yyaA
# 2: BPUM_3730___spoOJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 881
# Identity:     648/881 (73.6%)
# Similarity:   648/881 (73.6%)
# Gaps:          34/881 ( 3.9%)
# Score: 2341.5
# 
#
#=======================================

BSNT_06283___      1 ATGAAGCATTCATTCTCTCGTTTCTTCGGGCTTGGTGAGAAGGAACA---     47
                     ||||||||||||.||||.||.|||||||||||||||||.||.|||||   
BPUM_3730___s      1 ATGAAGCATTCACTCTCACGCTTCTTCGGGCTTGGTGACAAAGAACATCC     50

BSNT_06283___     48 ------------------GGAGCCGGAGATTGCTGAACATGATACAAACA     79
                                       .|||.|.|||||||||||.|||||||||...|
BPUM_3730___s     51 TGAGCGTGAAACCGAAATAGAGGCAGAGATTGCTGAGCATGATACATTAA    100

BSNT_06283___     80 AAGAAGAGATTCTGGAAATACCGGTAAATGCTATCGTTCCCAACCGTTTT    129
                     |.||||||||.|.|||..|.|||||..|..|.||..|.||.|||||||||
BPUM_3730___s    101 AGGAAGAGATACAGGAGCTCCCGGTTGACACAATTATGCCAAACCGTTTT    150

BSNT_06283___    130 CAGCCACGCACCATTTTCTCAGATGAAAAAATCAAAGAGTTAGCAATGAC    179
                     |||||||||||||||||.|||||.|||||.||..|.|||.|.||.|.|||
BPUM_3730___s    151 CAGCCACGCACCATTTTTTCAGAAGAAAAGATACATGAGCTGGCCACGAC    200

BSNT_06283___    180 CATTCATACACACGGCATTATTCAGCCGATTGTTGTTAGGCATACAGAAG    229
                     .||||||||.||.|||||||||||.||.|||||.||.||.|..|||||||
BPUM_3730___s    201 GATTCATACCCATGGCATTATTCAACCTATTGTCGTCAGACCGACAGAAG    250

BSNT_06283___    230 AAGAAGGCCAATACGAACTCATTGCAGGTGAAAGACGCTGGAGAGCGGTG    279
                     |||||||..||||.|||||.||.||.|||||||||||.|||||||||||.
BPUM_3730___s    251 AAGAAGGAAAATATGAACTGATCGCCGGTGAAAGACGATGGAGAGCGGTA    300

BSNT_06283___    280 CAATCGCTTGAGTGGGAAAAGATTCCGGCAATTATTAAGGATTTTTCCGA    329
                     ||..|.|||.|.|||||.||.||.||.||.|||||.||.||||||.|.||
BPUM_3730___s    301 CAGACTCTTCAATGGGAGAAAATCCCCGCTATTATAAAAGATTTTACTGA    350

BSNT_06283___    330 CACGGAAACCGCTTCTGTGGCGTTAATCGAGAACTTGCAGCGGGAAGAAC    379
                     .||||||||.||.|||||.||.||.||.||.||.|||||..|.|||||.|
BPUM_3730___s    351 TACGGAAACGGCATCTGTCGCATTGATTGAAAATTTGCAAAGAGAAGAGC    400

BSNT_06283___    380 TGTCTTCTATTGAGGAAGCGCATGCTTATGCTAGGCTGCTTGAGCTGCAT    429
                     |||||.|||||||.||.||.|||||.|||||..|.||..|.|||||.|||
BPUM_3730___s    401 TGTCTGCTATTGAAGAGGCTCATGCCTATGCACGTCTTTTAGAGCTTCAT    450

BSNT_06283___    430 GATTTAACACAGGAGGCACTCGCACAGCGCTTAGGAAAAGGGCAGTCTAC    479
                     ||||||||||||||.||.||.||.|||||.|||||.||.||.||.|||||
BPUM_3730___s    451 GATTTAACACAGGAAGCGCTTGCTCAGCGTTTAGGTAAGGGACAATCTAC    500

BSNT_06283___    480 AATCGCGAATAAGCTTCGGTTATTAAAGCTGCCTCAGCCGGTCCAAGAGG    529
                     ..|.||.||.||.|||.|..|.||||||.|||||.|...|||.|||.|.|
BPUM_3730___s    501 TGTTGCAAACAAACTTAGACTTTTAAAGTTGCCTGAAGAGGTACAACAAG    550

BSNT_06283___    530 CGATTATGGAGAAGAAAATCACCGAGCGCCATGCCAGAGCGCTGATTCCG    579
                     |.|||.|.|||||.||||||.|.||..|.|||||..|..|.||..|.||.
BPUM_3730___s    551 CCATTTTAGAGAAAAAAATCTCTGAAAGGCATGCACGTTCACTTGTACCC    600

BSNT_06283___    580 CTGAAACAGCCTGAGCTCCAAGTCACACTGCTCACA-GAGATTATTGAGA    628
                     ||.||.|..||.||..|.|||.||.|||| ||..|| ||.||.||  .||
BPUM_3730___s    601 CTAAAGCTTCCAGAATTACAAATCGCACT-CTTGCAGGAAATCAT--CGA    647

BSNT_06283___    629 AAAG--TTTAAATGTAAAGCAGACGGAAGACCGCGTGGTGAAAATGCTGG    676
                     ||||  ..|.||||||||.|||||.|||||.||.||.|||||||||||.|
BPUM_3730___s    648 AAAGCAGCTGAATGTAAAACAGACTGAAGAGCGTGTAGTGAAAATGCTTG    697

BSNT_06283___    677 AGC-AAGGCCAGA--GAAAGCCAAAGCCGAGACGCAAAGCATTCAGCAGA    723
                     |.| ||...||||  |.||.||.|.|||.|.|||.||.||.||.||..|.
BPUM_3730___s    698 AACAAAAAACAGATCGCAAACCGAGGCCAAAACGTAAGGCGTTTAGTCGT    747

BSNT_06283___    724 GATACAAGAATTGCGATGAACACGATTCGCCAGTCACT--ATCAATGGTG    771
                     ||||||.|||||||||||||.||.|||||.|||||.||  ||  |||||.
BPUM_3730___s    748 GATACACGAATTGCGATGAATACCATTCGTCAGTCTCTCCAT--ATGGTA    795

BSNT_06283___    772 GAAGACAGCGGTGTAAAATTGAATACGGAAGAAGAAGAATTTGAAGAATA    821
                     |||||||||||..|.|||.|.|||||.||.||||||||||||||.|||||
BPUM_3730___s    796 GAAGACAGCGGGCTTAAAATAAATACCGAGGAAGAAGAATTTGAGGAATA    845

BSNT_06283___    822 TATTCAATTAACGATTCGCATACCAAAATAG    852
                     |||.||||||||.|||||.||.||.||||||
BPUM_3730___s    846 TATCCAATTAACAATTCGGATTCCTAAATAG    876


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06283 and BPUM_3730

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
