Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06272 and BPUM_3721
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:42
# Commandline: needle
# -asequence dna-align/BSNT_06272___yyaF.1.24716.seq
# -bsequence dna-align/BPUM_3721___yyaF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06272___yyaF-BPUM_3721___yyaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06272___yyaF-BPUM_3721___yyaF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06272___yyaF
# 2: BPUM_3721___yyaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1109
# Identity: 866/1109 (78.1%)
# Similarity: 866/1109 (78.1%)
# Gaps: 16/1109 ( 1.4%)
# Score: 3290.5
#
#
#=======================================
BSNT_06272___ 1 ATGGCTTTAACAGCTGGAATTGTTGGTTTGCCGAACGTCGGAAAATCAAC 50
|||||||||||||||||.||||||||.||.||.||||||||.||.|||||
BPUM_3721___y 1 ATGGCTTTAACAGCTGGTATTGTTGGCTTACCTAACGTCGGGAAGTCAAC 50
BSNT_06272___ 51 ACTATTTAACGCAATTACACAGGCCGGTGCCGAATCAGCCAACTACCCGT 100
.||||||||.||||||||||||||.||.||.||.||.||.|||||.||||
BPUM_3721___y 51 GCTATTTAATGCAATTACACAGGCTGGAGCGGAGTCTGCTAACTATCCGT 100
BSNT_06272___ 101 TCTGTACAATTGATCCGAACGTGGGAATTGTAGAGGTGCCGGATGATCGT 150
|.|||||.||||||||.|||||.|||||||||||.||.||.||.||.|||
BPUM_3721___y 101 TTTGTACCATTGATCCAAACGTCGGAATTGTAGAAGTTCCAGACGAGCGT 150
BSNT_06272___ 151 CTGCAAAAGCTGACTGAGCTGGTCAACCCGAAGAAGACTGTGCCGACTGC 200
.|||||||.||.||.||..||||..|.|||||.|||||.||.||||||||
BPUM_3721___y 151 TTGCAAAAACTAACAGAATTGGTGCAGCCGAAAAAGACAGTTCCGACTGC 200
BSNT_06272___ 201 TTTTGAATTCACTGATATTGCAGGGATTGT-AAAGGGCGCATCTAAAGGA 249
|||||||||||||||||||||.||.||||| |||||| ||.||.|||||.
BPUM_3721___y 201 TTTTGAATTCACTGATATTGCCGGTATTGTCAAAGGG-GCTTCAAAAGGT 249
BSNT_06272___ 250 GAAGGACTCGGCAACAAGTTCCTATCTCATATTCGCCAAGTTGACGCGAT 299
|||||..|.||.||.||.|||||.||.||.|||||.|||||.||.||.||
BPUM_3721___y 250 GAAGGTTTAGGGAATAAATTCCTTTCGCACATTCGTCAAGTAGATGCAAT 299
BSNT_06272___ 300 TTGCCACGTTGTCCGTGCTTTTTCCGATGACAACATTACACACGTTTCCG 349
.||.|||||.||..|.||||||.|.|||||.|||||.||.|||||.||.|
BPUM_3721___y 300 CTGTCACGTGGTGAGAGCTTTTGCTGATGATAACATCACGCACGTATCAG 349
BSNT_06272___ 350 GAAAGGTTGATCC-GATTGATGACATTGAAACGATCAACCTTGAGCTGAT 398
|.||||||||.|| |..|.| ||.||.|||||.||.||..|.|||.||||
BPUM_3721___y 350 GTAAGGTTGACCCTGTGTCA-GATATCGAAACCATTAATTTAGAGTTGAT 398
BSNT_06272___ 399 CCTCGCTGATATGGAAACGGTTGAAAAGCGGATTACACGCGTCAGCAAGC 448
..|.||||||.|.|||||.||||||||.||..|..|.||.||.||.||||
BPUM_3721___y 399 TTTGGCTGATTTAGAAACAGTTGAAAAACGTTTGGCTCGTGTGAGTAAGC 448
BSNT_06272___ 449 TTGCGAAGCAAAAAGATAAAGACGCTGTATTTGAGTTTGAGATTTTATCT 498
||||.||.|||||.|||||.||.||.|||..|||.|||||.|||||.||.
BPUM_3721___y 449 TTGCAAAACAAAAGGATAAGGAAGCGGTAGCTGAATTTGATATTTTGTCG 498
BSNT_06272___ 499 AAACTGAAAG-AAGCGTTTGAGAG-TGAAAAGCCTGCTCGATCTGTAGAA 546
||.|| ||.| |.||.||||| || ||..||..|.||..|||||||||||
BPUM_3721___y 499 AAGCT-AATGCATGCATTTGA-AGCTGGGAAATCGGCAAGATCTGTAGAA 546
BSNT_06272___ 547 TTCACTGAGGAGCAGCAAAAGCTTGTGAAGCAGCTCCATTTACTGACTTC 596
||.||.||||||||.||.||.||||||||.|||||.||||||||.||.||
BPUM_3721___y 547 TTTACAGAGGAGCAACAGAAACTTGTGAAACAGCTTCATTTACTCACATC 596
BSNT_06272___ 597 GAAGCCTATTTTGTACGTGGCCAACGTAAGTGAAGATGAAGTTGCTGATC 646
.||.||..||.|.||.||.||.||.||.|||||.||.|||||.||.|||
BPUM_3721___y 597 TAAACCAGTTCTTTATGTAGCAAATGTGAGTGAGGACGAAGTAGCAGAT- 645
BSNT_06272___ 647 CAT--CTGGCAATGAAAATGT--AGCGAAGATTCGCGAGTACGCTGCCGG 692
||| | |||||.||..|||| ||| |.||.||.||||..|||.||||
BPUM_3721___y 646 CATGAC-GGCAACGAGTATGTGCAGC--AAATCCGTGAGTTTGCTTCCGG 692
BSNT_06272___ 693 CGAAAACGCAGAAGTTATCGTTGTATGTGCAAAAATCGAATCTGAAATCG 742
.|||||.||.|||||.|||||.||||||||.||.|||||.||||||||.|
BPUM_3721___y 693 TGAAAATGCTGAAGTCATCGTCGTATGTGCGAAGATCGAGTCTGAAATTG 742
BSNT_06272___ 743 CTGAGCTTGAAGGCGAAGAAAAGCAAATGTTCTTGGAAGAGCTGGGCATT 792
|.|||||||||||.|||||.||.||.||||||.|.||||||||.||||||
BPUM_3721___y 743 CAGAGCTTGAAGGGGAAGAGAAACAGATGTTCCTTGAAGAGCTTGGCATT 792
BSNT_06272___ 793 CAAGAATCAGGTCTTGATCAGCTGATCAAAGCGTCTTACTCTCTTCTCGG 842
.||||.||||||||.|||||||||||..||||.|||||.||.|||||.||
BPUM_3721___y 793 AAAGAGTCAGGTCTAGATCAGCTGATTCAAGCATCTTATTCACTTCTTGG 842
BSNT_06272___ 843 CCTCGCAACATATTTCACAGCCGGAGAACAGGAAGTCAGAGCTTGGACAT 892
..|.||.||.|||||||||||.||.||.||||||||..|.||||||||.|
BPUM_3721___y 843 TTTAGCTACTTATTTCACAGCAGGTGAGCAGGAAGTACGCGCTTGGACGT 892
BSNT_06272___ 893 TCAAAAAAGGCATGAAAGCACCTGAGTGTGCAGGAATTATTCATAGTGAC 942
|.|||||.||.|||||.||.||.||.|||||.|||||.|||||||..|||
BPUM_3721___y 893 TTAAAAAGGGAATGAAGGCGCCGGAATGTGCTGGAATCATTCATACAGAC 942
BSNT_06272___ 943 TTTGAGCGGGGCTTCATTCGTGCTGAGACAGTTGCTTATGAGGATCTTCT 992
||||||||.||.||||||||||||||.||.|||||.|||||.|||.|.||
BPUM_3721___y 943 TTTGAGCGTGGGTTCATTCGTGCTGAAACGGTTGCATATGAAGATTTACT 992
BSNT_06272___ 993 TGCGGGCGGCGGTATGGCAGGAGCTAAAGAGGCAGGAAAAGTCCGCCTTG 1042
|||.|||||..|.|||.|.|..||.||||||||.|||||||||||.||.|
BPUM_3721___y 993 TGCTGGCGGGAGCATGTCTGCTGCAAAAGAGGCTGGAAAAGTCCGTCTAG 1042
BSNT_06272___ 1043 AAGGGAAAGAATATGTGGTCCAAGACGGAGATGTTATTCATTTCCGATTT 1092
||||.|||||||||||.||..||||.|||||.||||||||||||||.|||
BPUM_3721___y 1043 AAGGTAAAGAATATGTAGTGAAAGATGGAGACGTTATTCATTTCCGTTTT 1092
BSNT_06272___ 1093 AATGTATAG 1101
|||||||||
BPUM_3721___y 1093 AATGTATAG 1101
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