Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03186 and BPUM_3715
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_03186.1.24716.seq
# -bsequence dna-align/BPUM_3715.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03186-BPUM_3715.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03186-BPUM_3715.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03186
# 2: BPUM_3715
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1089
# Identity: 369/1089 (33.9%)
# Similarity: 369/1089 (33.9%)
# Gaps: 594/1089 (54.5%)
# Score: 734.0
#
#
#=======================================
BSNT_03186 0 -------------------------------------------------- 0
BPUM_3715 1 ATGAATAGAGGCTTGTTACTTCATGATAGGAGGTCATTAGAAGTGAAGAA 50
BSNT_03186 0 -------------------------------------------------- 0
BPUM_3715 51 AACAGAAGGAATTCACCATATCACAGCAATTGTAGGGCATCCTCAGGAGA 100
BSNT_03186 0 -------------------------------------------------- 0
BPUM_3715 101 ACGTTGATTTTTATGCAGGTGTTTTAGGACTTCGTCTCGTGAAGAAGACC 150
BSNT_03186 0 -------------------------------------------------- 0
BPUM_3715 151 GTGAATTTTGATGATCCAGGTACTTACCATTTATATTTTGGAAATGAAGG 200
BSNT_03186 0 -------------------------------------------------- 0
BPUM_3715 201 AGGATCTCCGGGAACGATTATTACGTTTTTCCCTTGGCCAGGTGCTCAAA 250
BSNT_03186 1 ------------------------------------------TTGT---- 4
||||
BPUM_3715 251 AGGGACAAATTGGCGCGGGTCAAGTGGGGGTGACGACATATGTTGTACCA 300
BSNT_03186 5 --------------TTGGTGAAA--AAGGTCT------------TATTT- 25
||..||.|| ||.|||| |||||
BPUM_3715 301 CCAGGCGCTTTCTCTTTCTGGAAGGAACGTCTTGAGCAGTTTGATATTTC 350
BSNT_03186 26 -----------TTGA------TGATACAGAAGACCTTCCGCT-------- 50
|||| |||| |||| ||||.|.||
BPUM_3715 351 CTATGAAATGGTTGAACGCTTTGAT---GAAG-CCTTTCTCTCATTTGAA 396
BSNT_03186 51 ---------GGC--GATCATGGAG------GA---TGC-----GAAAAGC 75
||| |.|.||.||| || ||| |||||
BPUM_3715 397 GATCCACACGGCTTGTTGATAGAGCTAGTAGAACGTGCGGAGGGAAAA-- 444
BSNT_03186 76 GGCAAAAGCGAGTGGACGCCTGACGGGATCACAACAAATGAAGCAAT-TA 124
||||| .||.|||||...|.||||..|.||..||.|||.|||.|| .|
BPUM_3715 445 --CAAAA-TGATTGGACATTTAACGGAGTTACGCCAGATGTAGCGATAAA 491
BSNT_03186 125 CGGGAATGAAAGGTGTGCTGCTATATT----------------CCTACGA 158
.|||..|| ||.|.||||.|.|||| |..||||
BPUM_3715 492 AGGGTTTG---GGGGAGCTGTTTTATTAACATCACAGCCAGAGCAAACGA 538
BSNT_03186 159 CCCGCAG--GC--GACCATACAATTG--TT--AACGGAAAGCTTTGGATA 200
.|||| || ||.||.|||||.| || ||||| .|||||
BPUM_3715 539 --TGCAGCTGCTAGAACAAACAATGGGATTCGAACGG-----GTTGGA-- 579
BSNT_03186 201 CACCAAAGTGGCCGAAGAAGA-----CCAGATT-----------GTCAGA 234
||.|||||.|| ..||||| ||.|||
BPUM_3715 580 ----------GCAGAAGAGGATTATGTAAGATTCCGTTCATTTGGTGAGA 619
BSNT_03186 235 CTGGCAACCTCAGCGGCCGTCGGCGGTGTCATTGATGT----------CC 274
..||.|| |||||||||||| ||
BPUM_3715 620 TAGGGAA-------------------TGTCATTGATGTGAACAAGACACC 650
BSNT_03186 275 ATTTACACCCTGAAAAAAGAGGAGTCGGAGGATATGGTACGGTACACCAT 324
..||.|||.|.||...|.| ||.||.|| ||| |||.||.|||
BPUM_3715 651 TGTTGCACGCGGACGTATG-GGTGTTGG-------GGT--GGTGCATCAT 690
BSNT_03186 325 ATAGCGTTTCGGACAAAGAAAAACGAACAGGCGAAAT------GGCTGCC 368
||.||.| |||.|..||...|.||.|||| || |..||.|
BPUM_3715 691 ATTGCAT---GGAGAGCGACCGATGATCAGG----ATCAGTTAGATTGGC 733
BSNT_03186 369 GA----TTATTGCTGAAA------ACCATCTG---CCTTCGTCAGAAATT 405
.| .||||||..||| |.||..|| |||..|..|||
BPUM_3715 734 AAAGACATATTGCACAAAGCGGGTATCAAGTGACACCTGTGCAAGA---- 779
BSNT_03186 406 CTCGACAGGGAATACTTTACATCA-----GTTTATTTCAGGGAGAAAGGC 450
||||.| ||||.||| .|||||||.||.|||...|||
BPUM_3715 780 -TCGAAA---------TTACTTCAATGCGATTTATTTTAGAGAGCTTGGC 819
BSNT_03186 451 GGTATCTTATTTGAAATTGCCACAGATGAACCGGGCTTT-------ATGA 493
||.||.||||||||||||||.||.|||...||.||.||| ||||
BPUM_3715 820 GGCATATTATTTGAAATTGCAACTGATCCTCCAGGGTTTGCACACGATGA 869
BSNT_03186 494 --CAGATGAAACGTTTTCTGAGCTAGGGACTTCCTTAAAACTGCC----- 536
|||..||||| |.||.|..|.| |.||.|||||.||
BPUM_3715 870 ATCAGTGGAAAC----TATGGGTGAAG-----CATTGAAACTTCCACCAC 910
BSNT_03186 537 ----TGAATGGCTGGAGAAACATAGAC------ACCAAAT--TACAGACA 574
|||| |.|.|.|.|||.| |.||||| |.|.|.||
BPUM_3715 911 AATATGAA------GCGCAGCGTAGTCAGATTGAACAAATTGTGCTGCCA 954
BSNT_03186 575 TTTTACCTGA---ACTTTAA------------------- 591
.|..|..||| |.||.||
BPUM_3715 955 ATAGAAGTGAGAGAGTTGAAAGGGAAAGGAGATGCATGA 993
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