Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05911 and BPUM_3712
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_05911.1.24716.seq
# -bsequence dna-align/BPUM_3712___katX1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05911-BPUM_3712___katX1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05911-BPUM_3712___katX1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05911
# 2: BPUM_3712___katX1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1639
# Identity: 888/1639 (54.2%)
# Similarity: 888/1639 (54.2%)
# Gaps: 497/1639 (30.3%)
# Score: 3184.0
#
#
#=======================================
BSNT_05911 0 -------------------------------------------------- 0
BPUM_3712___k 1 TTGAAGGAGGGATTCGAATTGAAAGAAGATCAACACCCTAAATCATCTTC 50
BSNT_05911 0 -------------------------------------------------- 0
BPUM_3712___k 51 AGAGCCAGAAGACACTTTGACAAATCGGCAAGGTCACCCCGTAACAGACA 100
BSNT_05911 0 -------------------------------------------------- 0
BPUM_3712___k 101 ATCAAAATATGAGAACCGTCGGAAATAGAGGCCCGACTACGCTTGAAAAC 150
BSNT_05911 0 -------------------------------------------------- 0
BPUM_3712___k 151 TACGATTTCCTAGAAAAAATCAGTCATTTTGACCGCGAACGTATTCCTGA 200
BSNT_05911 0 -------------------------------------------------- 0
BPUM_3712___k 201 ACGTGTCGTCCATGCACGCGGTGCCGGAGCTCACGGTTATTTTGAAGCCT 250
BSNT_05911 0 -------------------------------------------------- 0
BPUM_3712___k 251 ATGGCACATTCGGTGATGAACCTATTTCTACTTATACAAGAGCGAAATTA 300
BSNT_05911 0 -------------------------------------------------- 0
BPUM_3712___k 301 TTTCAGGAAAAAGGAAAAAAGACACCTGTTTTCGTCCGTTTTTCTTCTGT 350
BSNT_05911 0 -------------------------------------------------- 0
BPUM_3712___k 351 CATTCACGGCGGTCATTCTCCAGAAACATTGCGCGATCCTAGAGGGTTTG 400
BSNT_05911 1 -----------------------------------TTGGTCGGAAACAAC 15
.|.||.|||||||||
BPUM_3712___k 401 CGATTAAATTTTATACAGAAGAAGGCAACTGGGATCTCGTTGGAAACAAC 450
BSNT_05911 16 CTGAAAATCTTTTTTATCCGCGACCCGCTGAAATTTCCGGATCTTGTACA 65
||||||||.||.||||||||.||..|..||||||||||.|||.|.||.||
BPUM_3712___k 451 CTGAAAATTTTCTTTATCCGAGATGCTTTGAAATTTCCCGATTTGGTTCA 500
BSNT_05911 66 CGCATTTCAGCCTGATCCAGTGACAAACATCCAGGATGGTGAACGTATCT 115
.||.|||.||||.||.||.||.||.|||...|||||.||.||||||||.|
BPUM_3712___k 501 TGCGTTTAAGCCAGACCCTGTCACCAACCGTCAGGACGGCGAACGTATTT 550
BSNT_05911 116 TCGATTTCATTTCTCAATCTCCTGAAGCGACACACATGATCACCTTCTTG 165
|.||.|||.|.||.||.|||||||||||||||||.|||.|.||.||..|.
BPUM_3712___k 551 TTGACTTCGTCTCGCAGTCTCCTGAAGCGACACATATGGTGACATTTCTC 600
BSNT_05911 166 TTTTCGCCTTGGGGCATTCCGGCCAACTACCGGCAAATGCAGGGTTCAGG 215
|||||.||.||||||||.||.||.|.|||.|||||.|||||.||.|||||
BPUM_3712___k 601 TTTTCACCATGGGGCATCCCAGCAACCTATCGGCACATGCAAGGCTCAGG 650
BSNT_05911 216 CGTACATGCCTATAAATGGGTGAATGAGGAGGGCAAGGCCGTTCTCGTGA 265
.||.||||||||.|||||||||||..|.||.||.||.||.||.||.||.|
BPUM_3712___k 651 TGTCCATGCCTACAAATGGGTGAACCATGAAGGAAAAGCGGTACTGGTCA 700
BSNT_05911 266 AATACCATTTTGAACCGAAGCAGGGCATCCGCAACCTGACAC-AGAAGGA 314
||||.||.||||||||||||||.|||||.||||||||||||| ||||
BPUM_3712___k 701 AATATCACTTTGAACCGAAGCAAGGCATTCGCAACCTGACACAAGAA--- 747
BSNT_05911 315 AGCAG----AAGAGATTCAAGGGAAAAACTTTAACCATGCCACACAGGAT 360
||| |||.|||.|||||..||||||||||.||.||||||||||||
BPUM_3712___k 748 --CAGGCTCAAGCGATACAAGGCGAAAACTTTAATCACGCCACACAGGAT 795
BSNT_05911 361 TTATATGACGCGATTGAAAATGGCGATTATCCAGAGTGGGAAGTGTATGC 410
||||||||.||.|||||..|.||.|||.||||.||.|||||.||.|||||
BPUM_3712___k 796 TTATATGAAGCCATTGAGCAAGGAGATCATCCTGAATGGGAGGTCTATGC 845
BSNT_05911 411 ACAAATCATGAGCGATGATGAGCATCCTGAACTGGACTTTGATCCTCTTG 460
.||.||||||...|||||||..||||||.|.||.||||||||.||.||||
BPUM_3712___k 846 GCAGATCATGGAAGATGATGCCCATCCTCACCTTGACTTTGACCCGCTTG 895
BSNT_05911 461 ATCCGACAAAACTGTGGTATAAAGACGATTTTCCATGGAAACCGATCGG- 509
||||.||.||.||.|||||.||.||.||.|.|||||||||.||.||.||
BPUM_3712___k 896 ATCCAACCAAGCTATGGTACAAGGATGACTATCCATGGAAGCCTATTGGA 945
BSNT_05911 510 CAAATTGGTTCTGAACAAAAATCCGGAAAACTACCATGCGGAAGTGGAGC 559
|.|| ||||..|.|||||||||||.|||||.||....||.|||||.||||
BPUM_3712___k 946 CGAA-TGGTATTAAACAAAAATCCAGAAAATTATTTCGCAGAAGTTGAGC 994
BSNT_05911 560 AAGCTTCATTTGGAACGGGGGTGCTTGTCGACGGGCTT-GATTTTTCAGA 608
|||.|.|.|||||.||.||.||.|||||.||| ||||| |||||.|||||
BPUM_3712___k 995 AAGTTGCCTTTGGGACTGGCGTTCTTGTAGAC-GGCTTGGATTTCTCAGA 1043
BSNT_05911 609 CGACAAATTGCTCCAGGGGCGTACGTTTGCCTACTCTGATACGCAGCGCT 658
.||.|||||.||.||.||.||.||.||..|.||||||||.||||||||.|
BPUM_3712___k 1044 TGATAAATTACTTCAAGGACGCACCTTCTCTTACTCTGACACGCAGCGAT 1093
BSNT_05911 659 ACCGTGTAGGCGCAAATTACCTGCAGCTTCCGATCAACTCGCCGAAAAAG 708
|.||.||.||..||||.||..|.|||||.||||||||..|.|||||||||
BPUM_3712___k 1094 ATCGAGTGGGACCAAACTATTTACAGCTGCCGATCAATGCTCCGAAAAAG 1143
BSNT_05911 709 CATGTCGCCACCAACCAGGAAGGCGGGCAGATGCAATATCGGGTCGAT-- 756
|||||.|||||.||.||...||..|||||.|||.||||.|.|||||||
BPUM_3712___k 1144 CATGTAGCCACGAATCAAAGAGATGGGCAAATGGAATACCAGGTCGATCA 1193
BSNT_05911 757 AGAGCAGAAGGACAAAACCCGCACGTCAACTATGAGCCATCCATTATGGG 806
|| ||| ||||.||||||||.||.||.||.|||||.|||||.||..|.||
BPUM_3712___k 1194 AG-GCA-AAGGCCAAAACCCCCATGTAAATTATGAACCATCGATCCTCGG 1241
BSNT_05911 807 CGGGCTGAAGGAAGCGAAGCAGGACGGAAAAGACCATACGCCGCATGTCG 856
|||.||.||.|||||.|||||||||||.||.||.||||||||...|||.|
BPUM_3712___k 1242 CGGACTAAAAGAAGCTAAGCAGGACGGGAAGGATCATACGCCTTTTGTAG 1291
BSNT_05911 857 AAGGTGATGTAAAGCGTGAAGCGATTGACAGAACAAACAACTTCGGACAG 906
|.|||||.||.||.||.|||||.||||||.|..||||||||||||||||.
BPUM_3712___k 1292 AGGGTGACGTCAAACGGGAAGCCATTGACCGCCCAAACAACTTCGGACAA 1341
BSNT_05911 907 GCTGGAGAAACGTACCGGAGATTTACTGAATTTGAGCGGAAC-----GAA 951
||.|||||||||||.||..|.||.|.||| ||| ||||| |||
BPUM_3712___k 1342 GCCGGAGAAACGTATCGCCGCTTCAATGA--TTG---GGAACGTGAGGAA 1386
BSNT_05911 952 TTGATTACGAATTTGGTGAATACGCTTTCTACGTGCCGAAAAGAAATTCA 1001
|||||||.|||.||.||.||.||.|||.|.||.||.|.|||.||.|||||
BPUM_3712___k 1387 TTGATTAAGAACTTAGTCAACACTCTTGCGACTTGTCAAAAGGACATTCA 1436
BSNT_05911 1002 GGATCAAATGATTGAGAATTTCACAAAAGCTGATCCTGACTACGGAAAAC 1051
.|..||||||||.||.||.||.|||||.||.||.||||||||||||||.|
BPUM_3712___k 1437 AGCGCAAATGATCGAAAACTTTACAAAGGCAGACCCTGACTACGGAAAGC 1486
BSNT_05911 1052 GTGTAGCAGAAGGGCTAAAAAAGGTTTCCGAAAACAACAGC--AACGGGC 1099
||||.||.||.||..| |||||..|||..|.||.|||||| |.|||.|
BPUM_3712___k 1487 GTGTCGCTGACGGCTT--AAAAGCCTTCAAACAAGAACAGCCAAGCGGAC 1534
BSNT_05911 1100 CGATCGGCACAACTGAAACGGAACAGGCTGC----AAAGCAG-------- 1137
|.||.|||.| .|||||| || .||||.|
BPUM_3712___k 1535 CTATAGGCTC-----------TACAGGC-GCCGCTCAAGCCGTGGATGAT 1572
BSNT_05911 1138 --GCTGAACAGGAGAGC-CATCCATCTGATCCGTATTAA 1173
|.|.|||| |.||| || |||||.|||||.||||||
BPUM_3712___k 1573 GCGATTAACA--ACAGCACA-CCATCAGATCCTTATTAA 1608
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