Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05911 and BPUM_3712

See Amino acid alignment / Visit BSNT_05911 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_05911.1.24716.seq
#    -bsequence dna-align/BPUM_3712___katX1.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05911-BPUM_3712___katX1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05911-BPUM_3712___katX1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05911
# 2: BPUM_3712___katX1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1639
# Identity:     888/1639 (54.2%)
# Similarity:   888/1639 (54.2%)
# Gaps:         497/1639 (30.3%)
# Score: 3184.0
# 
#
#=======================================

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BPUM_3712___k      1 TTGAAGGAGGGATTCGAATTGAAAGAAGATCAACACCCTAAATCATCTTC     50

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BPUM_3712___k     51 AGAGCCAGAAGACACTTTGACAAATCGGCAAGGTCACCCCGTAACAGACA    100

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BPUM_3712___k    101 ATCAAAATATGAGAACCGTCGGAAATAGAGGCCCGACTACGCTTGAAAAC    150

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BPUM_3712___k    151 TACGATTTCCTAGAAAAAATCAGTCATTTTGACCGCGAACGTATTCCTGA    200

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BPUM_3712___k    201 ACGTGTCGTCCATGCACGCGGTGCCGGAGCTCACGGTTATTTTGAAGCCT    250

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BPUM_3712___k    251 ATGGCACATTCGGTGATGAACCTATTTCTACTTATACAAGAGCGAAATTA    300

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BPUM_3712___k    301 TTTCAGGAAAAAGGAAAAAAGACACCTGTTTTCGTCCGTTTTTCTTCTGT    350

BSNT_05911         0 --------------------------------------------------      0
                                                                       
BPUM_3712___k    351 CATTCACGGCGGTCATTCTCCAGAAACATTGCGCGATCCTAGAGGGTTTG    400

BSNT_05911         1 -----------------------------------TTGGTCGGAAACAAC     15
                                                        .|.||.|||||||||
BPUM_3712___k    401 CGATTAAATTTTATACAGAAGAAGGCAACTGGGATCTCGTTGGAAACAAC    450

BSNT_05911        16 CTGAAAATCTTTTTTATCCGCGACCCGCTGAAATTTCCGGATCTTGTACA     65
                     ||||||||.||.||||||||.||..|..||||||||||.|||.|.||.||
BPUM_3712___k    451 CTGAAAATTTTCTTTATCCGAGATGCTTTGAAATTTCCCGATTTGGTTCA    500

BSNT_05911        66 CGCATTTCAGCCTGATCCAGTGACAAACATCCAGGATGGTGAACGTATCT    115
                     .||.|||.||||.||.||.||.||.|||...|||||.||.||||||||.|
BPUM_3712___k    501 TGCGTTTAAGCCAGACCCTGTCACCAACCGTCAGGACGGCGAACGTATTT    550

BSNT_05911       116 TCGATTTCATTTCTCAATCTCCTGAAGCGACACACATGATCACCTTCTTG    165
                     |.||.|||.|.||.||.|||||||||||||||||.|||.|.||.||..|.
BPUM_3712___k    551 TTGACTTCGTCTCGCAGTCTCCTGAAGCGACACATATGGTGACATTTCTC    600

BSNT_05911       166 TTTTCGCCTTGGGGCATTCCGGCCAACTACCGGCAAATGCAGGGTTCAGG    215
                     |||||.||.||||||||.||.||.|.|||.|||||.|||||.||.|||||
BPUM_3712___k    601 TTTTCACCATGGGGCATCCCAGCAACCTATCGGCACATGCAAGGCTCAGG    650

BSNT_05911       216 CGTACATGCCTATAAATGGGTGAATGAGGAGGGCAAGGCCGTTCTCGTGA    265
                     .||.||||||||.|||||||||||..|.||.||.||.||.||.||.||.|
BPUM_3712___k    651 TGTCCATGCCTACAAATGGGTGAACCATGAAGGAAAAGCGGTACTGGTCA    700

BSNT_05911       266 AATACCATTTTGAACCGAAGCAGGGCATCCGCAACCTGACAC-AGAAGGA    314
                     ||||.||.||||||||||||||.|||||.||||||||||||| ||||   
BPUM_3712___k    701 AATATCACTTTGAACCGAAGCAAGGCATTCGCAACCTGACACAAGAA---    747

BSNT_05911       315 AGCAG----AAGAGATTCAAGGGAAAAACTTTAACCATGCCACACAGGAT    360
                       |||    |||.|||.|||||..||||||||||.||.||||||||||||
BPUM_3712___k    748 --CAGGCTCAAGCGATACAAGGCGAAAACTTTAATCACGCCACACAGGAT    795

BSNT_05911       361 TTATATGACGCGATTGAAAATGGCGATTATCCAGAGTGGGAAGTGTATGC    410
                     ||||||||.||.|||||..|.||.|||.||||.||.|||||.||.|||||
BPUM_3712___k    796 TTATATGAAGCCATTGAGCAAGGAGATCATCCTGAATGGGAGGTCTATGC    845

BSNT_05911       411 ACAAATCATGAGCGATGATGAGCATCCTGAACTGGACTTTGATCCTCTTG    460
                     .||.||||||...|||||||..||||||.|.||.||||||||.||.||||
BPUM_3712___k    846 GCAGATCATGGAAGATGATGCCCATCCTCACCTTGACTTTGACCCGCTTG    895

BSNT_05911       461 ATCCGACAAAACTGTGGTATAAAGACGATTTTCCATGGAAACCGATCGG-    509
                     ||||.||.||.||.|||||.||.||.||.|.|||||||||.||.||.|| 
BPUM_3712___k    896 ATCCAACCAAGCTATGGTACAAGGATGACTATCCATGGAAGCCTATTGGA    945

BSNT_05911       510 CAAATTGGTTCTGAACAAAAATCCGGAAAACTACCATGCGGAAGTGGAGC    559
                     |.|| ||||..|.|||||||||||.|||||.||....||.|||||.||||
BPUM_3712___k    946 CGAA-TGGTATTAAACAAAAATCCAGAAAATTATTTCGCAGAAGTTGAGC    994

BSNT_05911       560 AAGCTTCATTTGGAACGGGGGTGCTTGTCGACGGGCTT-GATTTTTCAGA    608
                     |||.|.|.|||||.||.||.||.|||||.||| ||||| |||||.|||||
BPUM_3712___k    995 AAGTTGCCTTTGGGACTGGCGTTCTTGTAGAC-GGCTTGGATTTCTCAGA   1043

BSNT_05911       609 CGACAAATTGCTCCAGGGGCGTACGTTTGCCTACTCTGATACGCAGCGCT    658
                     .||.|||||.||.||.||.||.||.||..|.||||||||.||||||||.|
BPUM_3712___k   1044 TGATAAATTACTTCAAGGACGCACCTTCTCTTACTCTGACACGCAGCGAT   1093

BSNT_05911       659 ACCGTGTAGGCGCAAATTACCTGCAGCTTCCGATCAACTCGCCGAAAAAG    708
                     |.||.||.||..||||.||..|.|||||.||||||||..|.|||||||||
BPUM_3712___k   1094 ATCGAGTGGGACCAAACTATTTACAGCTGCCGATCAATGCTCCGAAAAAG   1143

BSNT_05911       709 CATGTCGCCACCAACCAGGAAGGCGGGCAGATGCAATATCGGGTCGAT--    756
                     |||||.|||||.||.||...||..|||||.|||.||||.|.|||||||  
BPUM_3712___k   1144 CATGTAGCCACGAATCAAAGAGATGGGCAAATGGAATACCAGGTCGATCA   1193

BSNT_05911       757 AGAGCAGAAGGACAAAACCCGCACGTCAACTATGAGCCATCCATTATGGG    806
                     || ||| ||||.||||||||.||.||.||.|||||.|||||.||..|.||
BPUM_3712___k   1194 AG-GCA-AAGGCCAAAACCCCCATGTAAATTATGAACCATCGATCCTCGG   1241

BSNT_05911       807 CGGGCTGAAGGAAGCGAAGCAGGACGGAAAAGACCATACGCCGCATGTCG    856
                     |||.||.||.|||||.|||||||||||.||.||.||||||||...|||.|
BPUM_3712___k   1242 CGGACTAAAAGAAGCTAAGCAGGACGGGAAGGATCATACGCCTTTTGTAG   1291

BSNT_05911       857 AAGGTGATGTAAAGCGTGAAGCGATTGACAGAACAAACAACTTCGGACAG    906
                     |.|||||.||.||.||.|||||.||||||.|..||||||||||||||||.
BPUM_3712___k   1292 AGGGTGACGTCAAACGGGAAGCCATTGACCGCCCAAACAACTTCGGACAA   1341

BSNT_05911       907 GCTGGAGAAACGTACCGGAGATTTACTGAATTTGAGCGGAAC-----GAA    951
                     ||.|||||||||||.||..|.||.|.|||  |||   |||||     |||
BPUM_3712___k   1342 GCCGGAGAAACGTATCGCCGCTTCAATGA--TTG---GGAACGTGAGGAA   1386

BSNT_05911       952 TTGATTACGAATTTGGTGAATACGCTTTCTACGTGCCGAAAAGAAATTCA   1001
                     |||||||.|||.||.||.||.||.|||.|.||.||.|.|||.||.|||||
BPUM_3712___k   1387 TTGATTAAGAACTTAGTCAACACTCTTGCGACTTGTCAAAAGGACATTCA   1436

BSNT_05911      1002 GGATCAAATGATTGAGAATTTCACAAAAGCTGATCCTGACTACGGAAAAC   1051
                     .|..||||||||.||.||.||.|||||.||.||.||||||||||||||.|
BPUM_3712___k   1437 AGCGCAAATGATCGAAAACTTTACAAAGGCAGACCCTGACTACGGAAAGC   1486

BSNT_05911      1052 GTGTAGCAGAAGGGCTAAAAAAGGTTTCCGAAAACAACAGC--AACGGGC   1099
                     ||||.||.||.||..|  |||||..|||..|.||.||||||  |.|||.|
BPUM_3712___k   1487 GTGTCGCTGACGGCTT--AAAAGCCTTCAAACAAGAACAGCCAAGCGGAC   1534

BSNT_05911      1100 CGATCGGCACAACTGAAACGGAACAGGCTGC----AAAGCAG--------   1137
                     |.||.|||.|           .|||||| ||    .||||.|        
BPUM_3712___k   1535 CTATAGGCTC-----------TACAGGC-GCCGCTCAAGCCGTGGATGAT   1572

BSNT_05911      1138 --GCTGAACAGGAGAGC-CATCCATCTGATCCGTATTAA   1173
                       |.|.||||  |.||| || |||||.|||||.||||||
BPUM_3712___k   1573 GCGATTAACA--ACAGCACA-CCATCAGATCCTTATTAA   1608


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