Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06232 and BPUM_3708
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_06232___ppaC.1.24716.seq
# -bsequence dna-align/BPUM_3708___ppaC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06232___ppaC-BPUM_3708___ppaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06232___ppaC-BPUM_3708___ppaC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06232___ppaC
# 2: BPUM_3708___ppaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 940
# Identity: 695/940 (73.9%)
# Similarity: 695/940 (73.9%)
# Gaps: 23/940 ( 2.4%)
# Score: 2461.5
#
#
#=======================================
BSNT_06232___ 1 ATGGAAAAGATACTTATTTTCGGACACCAAAACCCAGACACAGATACGAT 50
||||.|||.|.|||..|.|||||||||.||||.||.||||||||.|||||
BPUM_3708___p 1 ATGGGAAAAACACTCGTATTCGGACACAAAAATCCTGACACAGACACGAT 50
BSNT_06232___ 51 TTGTTCTGCGATCGCTTATGCTGATTTGAAAAACAAACTCGGCTTCAATG 100
|||.|||||.||||||||.||||||.|.|||||.|||.|||||.||.|.|
BPUM_3708___p 51 TTGCTCTGCTATCGCTTACGCTGATCTAAAAAATAAAATCGGCGTCGAAG 100
BSNT_06232___ 101 CTGAGCCTGTCCGCCTCGGACAAGTCAACGGCGAAACACAATACGCGCTT 150
|.||..|.|||.|.||.|||.||.|||||||.||||||||||.|||..|.
BPUM_3708___p 101 CAGAAGCGGTCAGACTTGGAGAAATCAACGGAGAAACACAATTCGCATTA 150
BSNT_06232___ 151 GACTATTTCAAACAAGAAAGC-CCGCGTCTTGTTGAAACAGCTGCAAACG 199
||||..||.||||||| |||| ||.|||.|..|||||||.||||||||.|
BPUM_3708___p 151 GACTTCTTTAAACAAG-AAGCACCTCGTTTCATTGAAACGGCTGCAAATG 199
BSNT_06232___ 200 AAGTAAACGGC--GTTATCCTGGTTGACCATAACGAACGCCAGCAAAGCA 247
||..||| || ||.||.||.||.||.|||||||||..|||.|||||..
BPUM_3708___p 200 AAACAAA--GCAAGTCATTCTTGTCGATCATAACGAATTCCAACAAAGTG 247
BSNT_06232___ 248 TCAAAGACATTGAAGAGGTTCAGGTTTTAGAGGTTATCGACCATCACCGC 297
|.|..||.|||||..|.||.||.||....||.||.||.|||||||||||.
BPUM_3708___p 248 TAAGCGATATTGATCAAGTACAAGTGACTGAAGTCATTGACCATCACCGT 297
BSNT_06232___ 298 ATCGCTAACTTTGAAACAGCTGAGCCGCTTTACTATCGTGCTGAGCCTGT 347
||.||.||||||||||||..|||.||.||.||||||||.|||||||||||
BPUM_3708___p 298 ATTGCCAACTTTGAAACAAGTGAACCTCTATACTATCGCGCTGAGCCTGT 347
BSNT_06232___ 348 AGGCTGTACGGCTACCATCTTAAACAAAATGTACAAAGAGAATAACGTGA 397
.||||||||.||.||.||||||||||||||||||||||||||..|.||||
BPUM_3708___p 348 TGGCTGTACAGCAACAATCTTAAACAAAATGTACAAAGAGAACCAAGTGA 397
BSNT_06232___ 398 AAATCGAGAAAGAAATTGCCGGCCTTATGC---TGTCTGCGATCATTTCT 444
|.||.||.||||||||.||.|| |.||| |.|||||.|||||||||
BPUM_3708___p 398 AGATTGAAAAAGAAATCGCTGG---TTTGCTTTTATCTGCAATCATTTCT 444
BSNT_06232___ 445 GATTCCCTGTTATTTAAATCTCCAACTTGCACGGACCAAGACGTAGCAGC 494
||||||.||.||||.|||||.|||||.|||||..|.||.||..|.|..||
BPUM_3708___p 445 GATTCCTTGCTATTCAAATCCCCAACATGCACACAGCAGGATATTGATGC 494
BSNT_06232___ 495 AGCAAAAGAGCTTGCGGAGATCGCTGGAGTAAATGCTGAAGAATACGGCT 544
.||..|.|||||.||.||.|||||.||.|||.||.|.||||..||||||.
BPUM_3708___p 495 TGCGCATGAGCTAGCTGAAATCGCAGGGGTAGATCCAGAAGTTTACGGCC 544
BSNT_06232___ 545 TGAACATGCTGAAAGCAGGCGCTGATCTAAGCAAAAAAACAGTGGAAGAG 594
|..|||||||.|||||.||.|||||.||||||.|||||||.||..||||.
BPUM_3708___p 545 TAGACATGCTAAAAGCTGGTGCTGACCTAAGCCAAAAAACGGTTCAAGAA 594
BSNT_06232___ 595 CTCATTTCTCTTGATGCGAAAGAATTTACACTCGGCAGCAAGAAAGTCGA 644
.|.|||.|..|.|||||.||||||||..||||.||||..|..|||||.||
BPUM_3708___p 595 TTAATTACAATCGATGCAAAAGAATTCGCACTAGGCAATAGCAAAGTGGA 644
BSNT_06232___ 645 AATCGCACAAGTAAACACAGTGGACATTGAAGATGTAAAAAAACGCCAAG 694
|||.||.|||||.||.|||||.||.||.|.|||.||.|.|..|.|.||..
BPUM_3708___p 645 AATTGCGCAAGTCAATACAGTAGATATCGCAGAAGTGACAGCAAGACAGA 694
BSNT_06232___ 695 CTGA-ATTAGAAGCTGTG-ATCTCAA--AAGTTGTGGCTGAGAAGAATCT 740
|||| ||| ||||| | |..|||| ||||..|.||.|.|||...|||
BPUM_3708___p 695 CTGATATT-GAAGC---GAAAATCAATGAAGTCATCGCAGCGAAAGGTCT 740
BSNT_06232___ 741 TGATCTGTTCCTTCTCGTTATCACAGATATCTTAGAAAATGATTCACTTG 790
||||||.|||.||||.||.||||||||.|||.||||||||||.||.||||
BPUM_3708___p 741 TGATCTATTCGTTCTAGTGATCACAGACATCCTAGAAAATGACTCTCTTG 790
BSNT_06232___ 791 CTCTTGCAATCGGTAACGAAGCAGCGAAAGTGGAAAAAGCGTTCAACGTT 840
|.|||||..|||||...|||||.||.|||||.||||||||.||..|.||.
BPUM_3708___p 791 CACTTGCTCTCGGTGCAGAAGCGGCAAAAGTAGAAAAAGCATTTCATGTC 840
BSNT_06232___ 841 ACATTAGAAAACAACACAGCCCTCTTAAAAGGCGTTGTTTCCCGTAAAAA 890
|||.|.|||||||||||.||..|..|||||||.||.||.||..|.||.||
BPUM_3708___p 841 ACACTTGAAAACAACACCGCTTTACTAAAAGGTGTCGTATCAAGAAAGAA 890
BSNT_06232___ 891 ACAAGTCGTTCCTGTCTTAACAGACGCAATGGCTGAATAA 930
||||||.||.||||...|.|||||||||.| |..||||
BPUM_3708___p 891 ACAAGTTGTACCTGCACTGACAGACGCACT---TTCATAA 927
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