Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06223 and BPUM_3706
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:41
# Commandline: needle
# -asequence dna-align/BSNT_06223___yybT.1.24716.seq
# -bsequence dna-align/BPUM_3706___yybT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06223___yybT-BPUM_3706___yybT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06223___yybT-BPUM_3706___yybT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06223___yybT
# 2: BPUM_3706___yybT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2045
# Identity: 1451/2045 (71.0%)
# Similarity: 1451/2045 (71.0%)
# Gaps: 121/2045 ( 5.9%)
# Score: 5003.0
#
#
#=======================================
BSNT_06223___ 1 ---------ATGCCAAGCTTTTATGAAAAACCGCTGT--TTCGGTATCCC 39
.||||||||||.|||..||||| |||| |...||||||.
BPUM_3706___y 1 TTGATATCAGTGCCAAGCTTCTATAGAAAAC--CTGTCATCAAGTATCCG 48
BSNT_06223___ 40 ATCTAT-GCATTGATTGCTCT-------GTCAATTATTACAATCCTCATC 81
||| || ||.||.||||..|| ||| |||.|.|||.||
BPUM_3706___y 49 ATC-ATCGCTTTAATTGTCCTTGCGGTGGTC-------ACAGTTCTCCTC 90
BSNT_06223___ 82 AGCTTTTATTTTAACTGGATATTAGGAACCGTCGAAGTGCTGCTG----- 126
|.|.||||||.|||.|||||..||||| ||||.||
BPUM_3706___y 91 AACCTTTATTATAATTGGATCATAGGA-----------GCTGTTGGTCTT 129
BSNT_06223___ 127 ------CTGGCAGTTAT--TTTGTTTTTTATTAAGCGTGCTGATTCTCTT 168
||.||||.|.| |.|..||.||| |||.|.||.|||.|.|..
BPUM_3706___y 130 TTAGTCCTTGCAGGTGTGCTCTACTTCTTA--AAGTGGGCAGATACGCAA 177
BSNT_06223___ 169 ATTCGACAAGAGATTGATGCTTATATTTCTACGTTGTCCTACAGGTTGAA 218
.|||.|.|||||||||||.|.||||||||.||.||.|||||..|..|.||
BPUM_3706___y 178 GTTCAAAAAGAGATTGATTCATATATTTCAACATTATCCTATCGAGTCAA 227
BSNT_06223___ 219 AAAAGTCGGTGAAGAGGCATTGATGGAAATGCCGATTGGAATCATGCTTT 268
|||.||.||.|||||.|||||.|||||||||||.|||||.||.|||||.|
BPUM_3706___y 228 AAAGGTTGGAGAAGAAGCATTAATGGAAATGCCAATTGGTATTATGCTGT 277
BSNT_06223___ 269 TTAATGACCAATATTATATAGAATGGGCAAATCCGTTTCTTTCCTCTTGC 318
||||||||||.||||||||.||||||.|||||||.|||||..|.||.||.
BPUM_3706___y 278 TTAATGACCAGTATTATATCGAATGGACAAATCCATTTCTCGCTTCGTGT 327
BSNT_06223___ 319 TTTAATGAAAGCACTTTAGTGGGGAGATCACTT-TACGATACTTGTGAAT 367
|||.||||||||||..|.||.||.||||| ||| ||.|||||.|..||.|
BPUM_3706___y 328 TTTCATGAAAGCACGCTTGTCGGCAGATC-CTTGTATGATACATTCGAGT 376
BSNT_06223___ 368 CGGTAGTGCCGCTTATCAAACAAGAGGTGGAATCAGAAACGGTTACATTG 417
|..|.|||||.|||||.|||||||||||.||..||||||..||.||..||
BPUM_3706___y 377 CCATTGTGCCTCTTATTAAACAAGAGGTCGAGACAGAAAATGTGACGCTG 426
BSNT_06223___ 418 AATGACCGCAAGTTTAGGGTTGTCATCAAACGGGATGAGCGTCTGTTATA 467
|||||.||.||.||.|..||..|.||.||||||...||.||.||.|||||
BPUM_3706___y 427 AATGATCGGAAATTCAAAGTCATTATTAAACGGTCAGAACGCCTTTTATA 476
BSNT_06223___ 468 TTTCTTTGATGTAACAGAACAAATTCAGATTGAAAAGCTATATGAAAACG 517
||||||||||||.||||||||..|.||||||||||..|..||.|||||.|
BPUM_3706___y 477 TTTCTTTGATGTCACAGAACAGGTACAGATTGAAAGACAGTACGAAAATG 526
BSNT_06223___ 518 AAAGAACCGTCCTGGCATATATTTTCCTTGATAACTATGATGATGTGACA 567
||.||||.||..|..|.|||||.||..|.||.||.|||||||||||.||.
BPUM_3706___y 527 AACGAACGGTGTTATCTTATATCTTTTTAGACAATTATGATGATGTCACG 576
BSNT_06223___ 568 CAAGGATTGGATGACCAGACGAGAAGCACGATGAACAGCCAGGTGACAT- 616
||.||..|.|||||.|||..|.|.|||.|.||.||.||..|.|||||.|
BPUM_3706___y 577 CAGGGTCTTGATGATCAGGTGCGCAGCGCCATTAATAGTGAAGTGACGTC 626
BSNT_06223___ 617 -CTTTGCTGAACGCTTGGGCGCAGGAGTACGGGATCTTCTTGAAAAGGAC 665
|||| |.|||...|||||.|||||.||.||.||.|||.||||..|.|.
BPUM_3706___y 627 ACTTT--TAAACAACTGGGCACAGGAATATGGTATTTTCCTGAAGCGAAT 674
BSNT_06223___ 666 GTCTTCAGAGCGCTTTATCGCTGTACTTAATGAACACATCTTAACTGAAC 715
.||.||.||.||.|||||.||.||.||.||||||..|||.|||.|.||.|
BPUM_3706___y 675 TTCGTCCGAACGATTTATGGCAGTTCTAAATGAAAGCATTTTAGCAGAGC 724
BSNT_06223___ 716 TCGAAAATTCGAAGTTTTCGATTCTTGATGAAGTGCGGGAAAAAACCTCG 765
|.|||...|||||.||.||.|||.|.|||||.||.||.||.|||||
BPUM_3706___y 725 TGGAAGCGTCGAAATTCTCTATTTTAGATGAGGTCCGTGAGAAAAC---- 770
BSNT_06223___ 766 TTTGACGGTG----TAG-----CGCTGACGTTAAGCGTCGGTGTCGGGGC 806
.||.| ||| |||||||.||.||..||||..||||.||
BPUM_3706___y 771 -----AGGAGCGCATAGTGCGACGCTGACCTTGAGTATCGGGATCGGTGC 815
BSNT_06223___ 807 TTCAGTCTCTTCCCTGAAAGAACTTGGCG-ATTTGGCGCAATCCAG-CTT 854
.||.||..||||..|.|||||||||||.| |.|| ||.||.||.|| |||
BPUM_3706___y 816 ATCCGTACCTTCTTTAAAAGAACTTGGGGCACTT-GCTCAGTCGAGTCTT 864
BSNT_06223___ 855 GGACTTAGCACTGGGACGCGGCGGAGACCAGGTAGCCATTAAGCTGCCAA 904
|..||| ||.||.|||||.|||||.||.||.|||||||||||||.|||.|
BPUM_3706___y 865 GATCTT-GCCCTCGGACGAGGCGGGGATCAAGTAGCCATTAAGCAGCCGA 913
BSNT_06223___ 905 ACGGCAAGGTGAAGTTTTACGGCGGTAAAACAAACCCAATGGAGAAACGA 954
|.||.||.|||||.||.||||||||.|||||.||.||||||||||||||.
BPUM_3706___y 914 ATGGAAAAGTGAAATTCTACGGCGGGAAAACGAATCCAATGGAGAAACGG 963
BSNT_06223___ 955 ACAAGGGTGCGGGCCCGCGTGATTTCTCACGCTTTAAAGGAAATCGTCAC 1004
|||.|.||.||.||.||.||.||||||||.||||||||.|||||.||..|
BPUM_3706___y 964 ACACGTGTACGCGCACGAGTCATTTCTCATGCTTTAAAAGAAATTGTATC 1013
BSNT_06223___ 1005 CGAAAGCAGCAATGTGATTATCATGGGGCATAAATTCCCCGACATGGATT 1054
.||||||.|||||||.||.||||||||||||||.|||||.||||||||.|
BPUM_3706___y 1014 TGAAAGCGGCAATGTCATGATCATGGGGCATAAGTTCCCAGACATGGACT 1063
BSNT_06223___ 1055 CTATCGGCGCAGCGATCGGGATTTTAAAGGTGGCTCAGGCAAATAACAAA 1104
|||||||.|||.|.||.||||||||||||||.||.|||||.|||...|||
BPUM_3706___y 1064 CTATCGGTGCATCCATTGGGATTTTAAAGGTCGCCCAGGCCAATGGGAAA 1113
BSNT_06223___ 1105 GATGGTTTTATCGTGATTGACCCAAATCAAATCGGATCA-AGTGTGCAGC 1153
||.||||.|||.||.|||||..|.||.|||||.|| |.| |||||.||.|
BPUM_3706___y 1114 GAAGGTTATATTGTCATTGATGCCAACCAAATTGG-TGACAGTGTTCAAC 1162
BSNT_06223___ 1154 GTTTGATTGGGGAAATCAAAAAATATGAAGAACTGTGGTCAAGATTTATT 1203
|.||||||.|.|||||.||.||.||||||||.||.||||||.|.|||||.
BPUM_3706___y 1163 GCTTGATTAGTGAAATTAAGAATTATGAAGATCTATGGTCACGTTTTATC 1212
BSNT_06223___ 1204 ACGCCTGAAGAAGCAATGGAAATTTCCAATGATGACACACTGCTTGTGAT 1253
||.||.||.|||||.|||||..||.|.||.||||||||.|||||||||.|
BPUM_3706___y 1213 ACCCCAGAGGAAGCCATGGAGCTTGCAAAGGATGACACGCTGCTTGTGGT 1262
BSNT_06223___ 1254 CGTTGATACACATAAGCCGTCACTCGTTATGGAGGAACGGCTGGTCAATA 1303
|||.|||||||||||.|||||.|||||.|||||.|||||.||..||||||
BPUM_3706___y 1263 CGTGGATACACATAAACCGTCTCTCGTCATGGAAGAACGACTACTCAATA 1312
BSNT_06223___ 1304 AAATTGAACATATCGTGGTCATCGACCATCACCGCAGAGGTGAGGAGTTT 1353
|||||||||||.||||||||||.||||||||..|..|.||.|||||||||
BPUM_3706___y 1313 AAATTGAACATGTCGTGGTCATTGACCATCATAGACGCGGCGAGGAGTTT 1362
BSNT_06223___ 1354 ATCAGAGATCCGCTGCTCGTTTATATGGAACCATACGCTTCTTCCACAGC 1403
|||.|.|||||..|.||.||.||||||||.||.||.|||||.||||||||
BPUM_3706___y 1363 ATCCGTGATCCATTACTTGTCTATATGGAGCCGTATGCTTCATCCACAGC 1412
BSNT_06223___ 1404 GGAATTGGTGACAGAGCTGCTTGAATATCAGCCGAAGCGCTTAAAA---- 1449
.||..|.|||||||||||..|.||.|||||||||||| |||
BPUM_3706___y 1413 AGAGCTTGTGACAGAGCTTTTAGAGTATCAGCCGAAG------AAATTGC 1456
BSNT_06223___ 1450 --ATCAATATGATTGAAGCTACAGCCCTATTAGCTGGTATAATAGTGGAT 1497
||.||.|||||.|||||.||.||.||..|.||.||.||.||.||.|||
BPUM_3706___y 1457 GCATTAACATGATCGAAGCGACTGCGCTTCTCGCAGGGATCATCGTTGAT 1506
BSNT_06223___ 1498 ACAAAGAGCTTTTCTCTCCGCACGGGCTCGCGGACTTTTGATGCGGCTTC 1547
||||||||.||.||.||..|.|||||.||..|.||.||||||||.||.||
BPUM_3706___y 1507 ACAAAGAGTTTCTCGCTGAGAACGGGATCAAGAACGTTTGATGCAGCCTC 1556
BSNT_06223___ 1548 TTATTTAAGGGCAAAAGGCGCCGACACGGTGCTGGTGCAGAAGTTCCTGA 1597
|||..|..|.||.||.||.||.||..|.||.||.|||||.||||||||.|
BPUM_3706___y 1557 TTACCTTCGTGCGAAGGGGGCAGATCCTGTCCTTGTGCAAAAGTTCCTAA 1606
BSNT_06223___ 1598 AAGAAACCGTTGATTCCTATATTCAACGGGCGAAGCTGATCCAGCATACG 1647
||||.|||||.|||...||.||..|||||||.|||||.||.||||||||.
BPUM_3706___y 1607 AAGAGACCGTGGATCATTACATCAAACGGGCAAAGCTCATTCAGCATACA 1656
BSNT_06223___ 1648 GTCCTCTATAAAGATAACATTGCGATTGCTTC----TCTTCCTGAAAATG 1693
|...|.|||.||.||.|..|.||||||||||| .|.|||
BPUM_3706___y 1657 GATTTGTATCAAAATCAGGTGGCGATTGCTTCATTACCGTCC-------- 1698
BSNT_06223___ 1694 AAGA------GGAATACTTCGATCAAGTGCTGATTGCGCAGGCTGCCGAT 1737
|| |||.||.|..||||||.|...||||||.|||.|.||.|||
BPUM_3706___y 1699 --GACAGCTCGGAGTATTATGATCAAATTACGATTGCCCAGACGGCTGAT 1746
BSNT_06223___ 1738 TCGCTGCTGTCGATGAGTGAGGTTGAGGCTTCATTTGCGGTGGCGAGACG 1787
||.|||.||||.|||||||||||.||.||.||||||||.||.||.||.||
BPUM_3706___y 1747 TCCCTGTTGTCAATGAGTGAGGTAGAAGCGTCATTTGCTGTCGCTAGGCG 1796
BSNT_06223___ 1788 GGATGAACAA-ACGGTTTGTATCAGTGCGCGGTCGCTTGGCGAGGTAAAT 1836
.|||| |||| |||||.||.||.||||||.|.||..|.||.||..|.||.
BPUM_3706___y 1797 AGATG-ACAATACGGTGTGCATTAGTGCGAGATCATTAGGGGATATCAAC 1845
BSNT_06223___ 1837 GTTCAGATCATCATGGAGGCCCTGGAAGGCGGAGGGCATTTAACAAATGC 1886
|||||.||.||||||||.||..|.||.|||||.||.|||||.||.||.||
BPUM_3706___y 1846 GTTCAAATTATCATGGAAGCGTTAGATGGCGGCGGTCATTTGACTAACGC 1895
BSNT_06223___ 1887 GGCGACTCAGTTGTCCGGCATTTCAGTTTCTGAAGCGCTGGAACGGCT-G 1935
.||.||.||..|||..||.||..|..||...||||||.|.||.|.|.| .
BPUM_3706___y 1896 TGCAACCCAAATGTATGGTATAACCATTGAAGAAGCGGTAGAGCAGTTAA 1945
BSNT_06223___ 1936 AAGCACGCCATAGATGAGTATTTTGAGGGAGGCGTACAGAGATGA 1980
|||| .|||||.|||||.|||||.||.|||||.||.||.||||||
BPUM_3706___y 1946 AAGC-TGCCATTGATGAATATTTCGAAGGAGGGGTTCAAAGATGA 1989
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