Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00311 and BPUM_3701
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:13
# Commandline: needle
# -asequence dna-align/BSNT_00311___feuA.1.24716.seq
# -bsequence dna-align/BPUM_3701___feuA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00311___feuA-BPUM_3701___feuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00311___feuA-BPUM_3701___feuA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00311___feuA
# 2: BPUM_3701___feuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1037
# Identity: 651/1037 (62.8%)
# Similarity: 651/1037 (62.8%)
# Gaps: 148/1037 (14.3%)
# Score: 1775.0
#
#
#=======================================
BSNT_00311___ 1 ATGAAAAAGAT----ATCTCTTACCTT---------------ATTAATCT 31
|||||||| || |.||.|| ||| ||.|.|.|
BPUM_3701___f 1 ATGAAAAA-ATGGGCAGCTTTT--CTTTTCATTTGTATGGTCATGATTAT 47
BSNT_00311___ 32 TACTTCTCGCGCTGACGGCGGCAGCTTGCGGCAGCAAAAATGAATCAACT 81
.|||| |||||||.||||....|.||.||.||||.
BPUM_3701___f 48 CACTT----------------CAGCTTGTGGCAATGGAGATCAAACAACG 81
BSNT_00311___ 82 GC--CAGCAAGG----CAAGCGGCAC---AGCATCTGAGAAGAAGAAAAT 122
|| ||.|||.| |||.|..||| |.||.|.|..|||....||||
BPUM_3701___f 82 GCTACAACAAAGAAAACAACCTCCACGGAAACACCAGCTAAGGCTGAAAT 131
BSNT_00311___ 123 TGAATACCTTGATAAAACATATGAAGT-AACTGTACCGA-CAGACAAAA- 169
.||.||..|.|..||.||||||||||| ||| || | ||| |||||
BPUM_3701___f 132 AGAGTATTTAGGAAAGACATATGAAGTCAAC---AC--ACCAG-CAAAAC 175
BSNT_00311___ 170 ---TCGCCATTACGGGAAGCGTTGAATCAATGGAAGACGCGAAATTGCTT 216
|.|.||||.|.||||||.|.||||||||||||||.||.|||.|||||
BPUM_3701___f 176 GACTTGTCATTGCTGGAAGCTTAGAATCAATGGAAGATGCCAAACTGCTT 225
BSNT_00311___ 217 GACGTTCATCCGCAA--GGCGCAATTT---CATTCTCCGGCAAATTCCC- 260
|...|||| |.||| ||.|| || ||.|...|||||.||||||
BPUM_3701___f 226 GGTATTCA--CCCAATTGGTGC---TTCAACAGTAGGCGGCACATTCCCA 270
BSNT_00311___ 261 TGATATGTTCAAAGACATCACTGATAAAGCCAAACCAACCGGAGAAAAAA 310
|.|| |.||..||||||||||...||||.|..||...|..||.||.||||
BPUM_3701___f 271 TCAT-TATTTGAAGACATCACGTCTAAAACAGAAGGCATTGGTGAGAAAA 319
BSNT_00311___ 311 TGGAGCCAAATATTGAAAAGATTCTTGAA-ATGAAGCCAGATGTTATCCT 359
..||.|||||....|||||.|||| |||| .|.||.||.|||||.||..|
BPUM_3701___f 320 CAGAACCAAACGCAGAAAAAATTC-TGAAGCTCAAACCTGATGTCATTTT 368
BSNT_00311___ 360 TGCTTCAACAAAGTTTCCGGAAAAAACGCTGCAAAAAATCAGCACAG--- 406
.|..|||||||||||.|||..|...||..|.||||||.| |||..||
BPUM_3701___f 369 AGGGTCAACAAAGTTCCCGCCAGCGACCATTCAAAAACT-AGCGAAGATT 417
BSNT_00311___ 407 CAGGCACGACGATCCCAGTTTCTCATATCTCTTCAAACTGGAAGGAAAAC 456
|| .||.||.||.|||||.||||||||.|||||..|.|||||.|..||.
BPUM_3701___f 418 CA--AACAACCATTCCAGTGTCTCATATTTCTTCCGATTGGAAAGCCAAT 465
BSNT_00311___ 457 ATGATGCTGCTTGCCCAACTGACCGGAAAAGAGAAAAAAGCAAAGAAAAT 506
.|.||..||||||..|||.||||.||.|||||.|.|.|||.|||.|..||
BPUM_3701___f 466 CTCATATTGCTTGGACAATTGACTGGGAAAGAAACAGAAGTAAAAACGAT 515
BSNT_00311___ 507 TATTGCAGACTATGAACAGGATCT----AAAAGAAACAAAAACA--AAAA 550
.||||||.|||||.||.|.|| || |||||..|.||||||| ||||
BPUM_3701___f 516 CATTGCAAACTATCAAAAAGA-CTTAGAAAAAGCGAAAAAAACATTAAAA 564
BSNT_00311___ 551 TCAACGA-TAAAGCGAAAGATTCAAAAGCGCTTGTCATTA------GAAT 593
..|||.| ||| ||| |||||..|| |||.| |.||
BPUM_3701___f 565 GAAACAAGTAA----AAA----CAAAACAGC----CATCATCCTCCGCAT 602
BSNT_00311___ 594 TAGACAAGGCAACATTTACATTTACCCTGAACAGGTGTATTTCAACTCCA 643
|.|||||||..|..|||||.|.||.||||||.|.||.|||||||||||.|
BPUM_3701___f 603 TCGACAAGGAGATCTTTACGTCTATCCTGAAGATGTATATTTCAACTCTA 652
BSNT_00311___ 644 CACTATACGGTGATTTAGGCCTTAAGGCGCCGAACGAAGTAAAAGCTGCA 693
|..|.||.||.|||.|.||..|||..||.||.||||||||||||...||.
BPUM_3701___f 653 CCTTGTATGGAGATCTTGGATTTACTGCACCAAACGAAGTAAAAAAGGCC 702
BSNT_00311___ 694 AAAGCGCAAGAGCTGA-TTTCATTAGAAAAATTAAGTGAAATGAACCCGG 742
|||||.||| ..||.| |||||||.|||....|..|.|||.||.||||.|
BPUM_3701___f 703 AAAGCACAA-TCCTTACTTTCATTGGAACGGCTCGGCGAATTGGACCCTG 751
BSNT_00311___ 743 ACCATATTTTCGTCCAATTTTCTGATGATGAAAATGCAGACAAA-CCTGA 791
|..|||||||..|.|||||.|||||.||.|||||.|| ..|||| ||..|
BPUM_3701___f 752 ATTATATTTTTATTCAATTCTCTGAGGAAGAAAACGC-TTCAAATCCGAA 800
BSNT_00311___ 792 TGCCTTAAAAGATTTAGAGAAAAATCCAATC-----TGGAAAAGCCTTAA 836
.|||.|.||.||||||||| ||||||| |||..|||||||.|
BPUM_3701___f 801 AGCCCTCAAGGATTTAGAG-----TCCAATCAGATTTGGGCAAGCCTTCA 845
BSNT_00311___ 837 AGCAGTCAAAGAAGATCATGTGTATGTCAA-CTCAGTGGACCCTCTCGC- 884
||||||.|||.|||..||||||..||..|| .|| ||.||.||.|| ||
BPUM_3701___f 846 AGCAGTGAAACAAGGGCATGTGAGTGAAAATATC-GTCGATCCCCT-GCT 893
BSNT_00311___ 885 ACAAGGCGGCACAGCTTGGAGCAAAGTC-CGTTTCCTGA--AAGC-GGCT 930
.|||||.||.|||||||..||.|||..| |.||||..|| |||| |.|
BPUM_3701___f 894 TCAAGGTGGGACAGCTTTAAGTAAAACCACATTTCTCGAACAAGCAGTC- 942
BSNT_00311___ 931 GCTGAAAAATTG---------ACACAAAACTAA---- 954
||||| |.|.||||||.|
BPUM_3701___f 943 -------AATTGGTTATCATCAAAAAAAACTGAATGA 972
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