Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00313 and BPUM_3700
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:14
# Commandline: needle
# -asequence dna-align/BSNT_00313___ybbB.1.24716.seq
# -bsequence dna-align/BPUM_3700___ybbB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00313___ybbB-BPUM_3700___ybbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00313___ybbB-BPUM_3700___ybbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00313___ybbB
# 2: BPUM_3700___ybbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1895
# Identity: 989/1895 (52.2%)
# Similarity: 989/1895 (52.2%)
# Gaps: 583/1895 (30.8%)
# Score: 2066.5
#
#
#=======================================
BSNT_00313___ 1 --GTGCAA-AATGCA---------GTGATTTATCAACCGGTACAAATTGA 38
|..||| |||.|| .|||...|| .||||| ||..||..
BPUM_3700___y 1 ATGAACAATAATCCAAGACCTGAGCTGACGGAT--GCCGGT-CATTTTAT 47
BSNT_00313___ 39 ATATC--------------TAAAAAAGACA------AG--TGATCTCTTC 66
||||| .||||||..|| || |.|.|.|.|.
BPUM_3700___y 48 ATATCGCCTGATCAGTGTTGAAAAAATCCATCACACAGCATTACCGCATG 97
BSNT_00313___ 67 TCAGAACAGCAATTAGCCGATTCATTCGTGCTGATTTTTCA-TTTAAAAG 115
| ||||||.||..|..|||||.|||.| |||....|||||| |.|.|||.
BPUM_3700___y 98 T-AGAACAACAGCTTTCCGATGCATAC-TGCCTTCTTTTCAGTCTCAAAA 145
BSNT_00313___ 116 GAAACGGCTATATTTCGATCGGAACAAACACCAATCCTTTGCAAAAAAAG 165
|.|.||| |||||..| .||.||| ||..|||||||
BPUM_3700___y 146 GCAGCGG----ATTTCTCT--------TCATCAA-----TGATAAAAAAG 178
BSNT_00313___ 166 -----------------ACACTTTATGTTTGTCC-----GCCTAACGAGA 193
|||||.||| .|| |||.|||||.|
BPUM_3700___y 179 GGCGCCTAACAGATGAAACACTGTAT-----ACCATTATGCCAAACGATA 223
BSNT_00313___ 194 CCTTT-GGCT--TTAC---GCC--------------AGC-------AG-C 215
|.||| .||| .||| ||| ||| || |
BPUM_3700___y 224 CATTTATGCTAGATACCGTGCCCAATCAAAAACATGAGCTTTATTTAGTC 273
BSNT_00313___ 216 CGA-TGGACATATAGATGCCTGTCTGATCAGGCTTCA----AAGCTATAT 260
||| |..|||||| |||| ||.|||||| .||.|| ||
BPUM_3700___y 274 CGATTTCACATAT--ATGC---------CATGCTTCACGATGAGATA-AT 311
BSNT_00313___ 261 ----------CAAG-GAAGCCGGCCAAGATATTTTCACACCGTGCACAGA 299
|||| ||| .||.||| |.|.|||.|| .|||
BPUM_3700___y 312 ACCCATTTCACAAGAGAA---TGCAAAG-TCTCTTCTCA--ATGC----- 350
BSNT_00313___ 300 ATCGGAATTAG-CCAAACTGAAGCTTATAAATGTTTCACATATCGA--AA 346
||.|.||||.| |||.||.||.||.| |||| ||
BPUM_3700___y 351 ATGGCAATTCGTCCATACAGATGCCT----------------TCGACCAA 384
BSNT_00313___ 347 ATC--TTGC-CGTCCGGCT-TCA-AGA-GCTTGCCGCACTATG------G 384
||| ||.| ||| | ||| ||| |.|||.| ||.|| |
BPUM_3700___y 385 ATCCATTACTCGT-----TATCACAGATGATTGAC---CTTTGGAAGAAG 426
BSNT_00313___ 385 AATGAAT-CGTCTCA--GCTTTC----TCAGCTAAAATGTGGGATTGAA- 426
|||||.| ||| ||| .||||| .|||.| |.||| ||.||
BPUM_3700___y 427 AATGATTCCGT-TCATTCCTTTCAATGCCAGTT--ACTGT----TTCAAT 469
BSNT_00313___ 427 -GTACAAAGCCTGATTTATGACCTCTTTACTGC---CAGTTTATCTGATC 472
|| ||||| ||| ..||||| ||.||.|.|.|..|
BPUM_3700___y 470 CGT--------TGATT------CTC-AAACTGCTGACACTTCACCAGCAC 504
BSNT_00313___ 473 AA----------ACGGATACACATTCAGCAATCGAAAAAACAAAACACTA 512
|| |||| |||| ||||.||..||||||.||.||.||
BPUM_3700___y 505 AAGGTGGGGGACACGG---CACA---AGCACTCTTAAAAACGAAGCAATA 548
BSNT_00313___ 513 TATCGA--------------AACCCAT--GCCGATA-CAAAAATCACGCT 545
.|||.| ||||||| ||| || | |||.||
BPUM_3700___y 549 CATCAACGATCATTCAGATGAACCCATTCGCC--TAGC------CACACT 590
BSNT_00313___ 546 TGCCCAGCTGTCGCAAATGGCAGGAATCAGTGCCAAACACTACAGTGAAA 595
|||..|| |||||.|||||.||..||||.||.||.||.|||.
BPUM_3700___y 591 TGCTAAG---------ATGGCTGGAATTAGCCCCAATCATTATAGCGAAC 631
BSNT_00313___ 596 GCTTTAAAAAATGGACA----GGACAGAGCGTAACAGAATTTATTACGAA 641
..|||||.|| .|| ||.||.|||||.|||||.|.|.|.||||.
BPUM_3700___y 632 AATTTAAGAA----GCAATTTGGTCAAAGCGTTACAGACTATGTAACGAG 677
BSNT_00313___ 642 AACACGAATCACAAAGGC-----------AA--AACT----GCTCATGG- 673
|| |||||| || |||| ||.||.||
BPUM_3700___y 678 AA----------AAAGGCTGACTCGTGCTAAGCAACTGATAGCGCAAGGA 717
BSNT_00313___ 674 CAAAATCAAACTGCAAATTGAAAGAAATCGCACACCAAACCGGTTATCAA 723
||.|| |||.|| |.||| |.||.||.||..|||.||||||||||
BPUM_3700___y 718 CATAA-CAAGCT-----TAGAA--ATATTGCCCAGGAAATCGGTTATCAA 759
BSNT_00313___ 724 GATGAATTTTATTTCAGCAGAATCTTTAAAAAATATACAGG-----CTGT 768
||....|..||.||.||..||.|.|||||.|||.|.||.|| ||
BPUM_3700___y 760 GACCCTTACTACTTTAGTCGATTGTTTAAGAAAAAGACGGGTATAACT-- 807
BSNT_00313___ 769 TCACCTAC-AAGCTATATGAAAAAACGCCGAAAG---AAAATCGCCGCAT 814
|||.| .|| |||||||||| ||.||.|| ||||||...||||
BPUM_3700___y 808 ---CCTTCTCAG-TATATGAAAA---GCAGACAGCGTAAAATCATTGCAT 850
BSNT_00313___ 815 ACGGAAGGGGCACAATGGGCCATCTCATC---------------CCCCTT 849
|| ||.|||||| ||| ||.|||
BPUM_3700___y 851 AC--------------GGTCCATCT-ATCCTTGGACAATTCACACCGCTT 885
BSNT_00313___ 850 CACCACATACCTTTTGCGGCCGCTCTGCATCCAAAATGGACGTCTTACTA 899
|||....|.||||.|||.||..||||.|||||.||.|||||..|.||..|
BPUM_3700___y 886 CACTTGCTTCCTTATGCTGCACCTCTTCATCCGAAGTGGACTGCCTATGA 935
BSNT_00313___ 900 CTATCAGCATTATTCGACA-GATATACCCGTCCAGCTCAGTGCATACCGG 948
.|.|.|.||.|| |.||.| |||||.|||.|.||..|.|..|||.||||.
BPUM_3700___y 936 TTTTGAACACTA-TGGAGACGATATTCCCATTCATTTAAACGCACACCGA 984
BSNT_00313___ 949 TTTAATGAAAAGTGGGAAGAAAACCT-------GTACACGTTATCACAGG 991
.|||||.||.|..|.|||..|.||.| ||||| |.|.|
BPUM_3700___y 985 GTTAATCAACATAGCGAAATAGACATCCAGCAAGTACA-------AAAAG 1027
BSNT_00313___ 992 CAGAACCAGA---TGTGATTGTCAGCATGGATTCTATTTCTCCA--GAAG 1036
||.||||||| |.|.||||..|.| ||| .|..||.|.| ||||
BPUM_3700___y 1028 CACAACCAGAACTTATCATTGCAAAC---GAT--CAAATCACAAAGGAAG 1072
BSNT_00313___ 1037 AACAAGA-TCGCCTGAATCGCATCGCAGAA---GTCATGTACCTT----- 1077
|..|||| .|.|.|.|||| || |||.|||||.||
BPUM_3700___y 1073 AGAAAGAGGCACTTCAATC---------AATTTGTCCTGTACATTTTGTC 1113
BSNT_00313___ 1078 -CCTTCAGA--AGAAAGCTGGAGAACCCACTTTCTGCAAACTGCCTCATT 1124
|.||||.| |..||.||||.|..|.||.||.|...|.||.|||.|..|
BPUM_3700___y 1114 CCTTTCAAATTATTAAACTGGCGGGCTCAGTTCCAAGAGACAGCCGCCCT 1163
BSNT_00313___ 1125 TTTAAAGGAGGAGTCCGAAGCAGAAAAGTGG------------------C 1156
.|||..|||.||....||||||||..|.||| |
BPUM_3700___y 1164 ATTAGGGGAAGAAAAAGAAGCAGAGGAATGGCTGATACATTACGATGAAC 1213
BSNT_00313___ 1157 TAGCGGATTATGACCAGCAGA-------CA-ACAGCCGCCAAAAAAACAC 1198
|||..||.||| ||.|..||| || |||| .|||||||||.
BPUM_3700___y 1214 TAGTAGAGTAT-ACGAAGAGAGTTTGCTCACACAG----GAAAAAAACAA 1258
BSNT_00313___ 1199 T----TCAACACGTTCAAGGGCTGCGTTTTCTCTTTTTGAGGCTGCAT-A 1243
| .||| ||| ||| ||.|| |
BPUM_3700___y 1259 TGCTCCCAA-----TCA---------------------GAG--TGTATCA 1280
BSNT_00313___ 1244 AGCAAAACTTCTATCTGGCACAT-AACCG---AAGTGTCCGCGAAGTTTT 1289
||...||| |||| ||.|.||.| ||||| || ||||.|
BPUM_3700___y 1281 AGATCAAC-TCTA-CTTGTACGTCAACCGCACAA-TGTCAG--------- 1318
BSNT_00313___ 1290 CTTTGGGGAT-TTAGGACTCAGCTCGGCAACAACGGCTG----ACACACC 1334
.||..|| ||||.| .||.|||| || .|.|.||
BPUM_3700___y 1319 ---AGGTCATATTAGAA--GAGATCGG----------TGTGCCTCCCGCC 1353
BSNT_00313___ 1335 T----TCAGAACAAGC-GATTTCGTTAGA---------AAATATCGCAAA 1370
| ||| |||.||| |.|| |.|||| |.||||||| ..
BPUM_3700___y 1354 TTTCATCA-AACTAGCAGCTT--GATAGAGCAGAAAATAGATATCGC-CT 1399
BSNT_00313___ 1371 TTACCAAG----------CTGACTGTATGATGCTTTTTCTTTT---TAAA 1407
|||.|.|| |.|||||.|| || ||||.||.|| ||||
BPUM_3700___y 1400 TTATCCAGCAGTGTGATCCAGACTGCAT-AT--TTTTACTCTTGCATAAA 1446
BSNT_00313___ 1408 GAGCCGGAGACTATAGCTTACTACCAGCAATT---ACAGCAGACAGAAGC 1454
||.||.||.||.||.||||..|||||.||||| ||||||| |||||
BPUM_3700___y 1447 GAACCAGACACCATCGCTTTTTACCATCAATTAAAACAGCAG---GAAGC 1493
BSNT_00313___ 1455 ATGGCAAAACCTAAGCGC-GGTACGGAATAAGCGTGTTTATCTTCTATCC 1503
.|||||||||.|.||.|| |.|.||....|||| |||.||| ||.
BPUM_3700___y 1494 TTGGCAAAACATTAGAGCAGTTGCGAGGCAAGC-TGTCTAT------TCG 1536
BSNT_00313___ 1504 CTT------GACCCGTGGAATGAATACTCAGCTTGC-GGGCACGAACGCA 1546
||| ||.||.||||..|||||.||||| ||| .|.|||..|||..
BPUM_3700___y 1537 CTTTCTTCAGATCCATGGAGAGAATATTCAGC-TGCTAGCCACTTACGGG 1585
BSNT_00313___ 1547 TCGTTCAGCAAACTGTT-TCTTTATTATCCGGAGATTGTCCATGA 1590
||.||||.| |.||.|| ||||| |||||||.|.
BPUM_3700___y 1586 TCATTCAAC-ATCTATTATCTTT-TTATCCGTAA----------- 1617
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