Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02070 and BPUM_3695
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:32
# Commandline: needle
# -asequence dna-align/BSNT_02070___yjiB.1.24716.seq
# -bsequence dna-align/BPUM_3695.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02070___yjiB-BPUM_3695.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02070___yjiB-BPUM_3695.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02070___yjiB
# 2: BPUM_3695
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1314
# Identity: 788/1314 (60.0%)
# Similarity: 788/1314 (60.0%)
# Gaps: 231/1314 (17.6%)
# Score: 2162.0
#
#
#=======================================
BSNT_02070___ 1 ATGAATGTGTTAAAC--CGCCGGCAA--GCCTTGCAGCGAGCGCTGCTCA 46
||| .|||| ||.|..||| |||.||||...|.||.|..|.|
BPUM_3695 1 ----ATG---GAAACAACGTCCCCAAGTGCCGTGCAAAAAACGTTATTAA 43
BSNT_02070___ 47 ATGGGAAAAACAAACAGGATGCGTATCATCCGTTTCCATGGTATG--AAT 94
..||.||||||||.|||||..|||||||.||.|||...||||||| ||
BPUM_3695 44 GAGGAAAAAACAAGCAGGACCCGTATCACCCATTTGATTGGTATGCCAA- 92
BSNT_02070___ 95 CGATGAGAAAG-GATGCGCCTGTTTCCTTTGATGAAGAAAACCAAGTGTG 143
.|||.|.||| .|| |.||||||...|||||.||||..|.||.|..|||
BPUM_3695 93 -CATGCGCAAGACAT-CACCTGTTCATTTTGACGAAGCCAGCCGAACGTG 140
BSNT_02070___ 144 GAGCGTTTTTCTTTATGATGATGTCAAAAAAGTTGTTGGG---------- 183
|||.||.||....||.||.||.| ||| ||
BPUM_3695 141 GAGTGTATTCACCTACGAGGAAG-CAA-----------GGCGCGTGACAA 178
BSNT_02070___ 184 --GATAAAGAGTTGTTTTCCAGTTGCATGCCGCAGC-------AGACAAG 224
||||||||....|||||.||| |||| |.||.||
BPUM_3695 179 TCGATAAAGATACCTTTTCGAGT---------CAGCCTCCTAAAAACCAG 219
BSNT_02070___ 225 CTCTATTGGAA--ATTCCATCATTAA------------CATGGACCCGCC 260
| |||| ||||..|.||.|| .||||||||.||
BPUM_3695 220 C------GGAAGCATTCACTGATGAAAACAATGGTGATGATGGACCCTCC 263
BSNT_02070___ 261 GAAGCATACAAAAATCCGTTCAGTCGTGAACAAAGCCTTTACTCCGCGCG 310
.||.||.||....|||||.||..|.||.|.||||||||||||.||.||.|
BPUM_3695 264 CAATCACACTCGCATCCGCTCCATTGTCAGCAAAGCCTTTACCCCTCGAG 313
BSNT_02070___ 311 TGATGAAGCAATGGGAACCGAGAATTCAAGAAATCACAGATGAACTGAT- 359
|.|||||....|||||.||..|.|||||.|||.|.|..|||||||||||
BPUM_3695 314 TCATGAAATTGTGGGAGCCTCGTATTCATGAATTAATGGATGAACTGATG 363
BSNT_02070___ 360 TCAAAAATGTCAGGGGCGCAGTGAGTTTGACCTTGTTCACGATTTTTCAT 409
.||.||.| |.|.||....|..|||.|||||||.||.||.||..||||.|
BPUM_3695 364 GCACAACT-TGAAGGAAAAAAAGAGATTGACCTAGTGCAAGACATTTCCT 412
BSNT_02070___ 410 ACCCGCTTCCGGTTATTGTGATATCTGAGCTGCTGGGAGTGCCTTCAGCG 459
|.||||||||.||.|||||.||..|.|||||..|.||.|||||.||||.|
BPUM_3695 413 ATCCGCTTCCTGTCATTGTCATTGCAGAGCTTTTAGGTGTGCCCTCAGAG 462
BSNT_02070___ 460 CATATGGAACA---GTTTAAAGCATGGTCTGATCTTCTGGTCAGTACACC 506
|||| |||| .|||||||.||||||.|||.||||.|||||.|..||
BPUM_3695 463 CATA---AACAATCTTTTAAAGAATGGTCAGATATTCTCGTCAGCATGCC 509
BSNT_02070___ 507 GAAGGATAAAAGTGAA------------GAAGCTGAAAAAGCCTTTTTGG 544
|||||||||| |.||||||| |||
BPUM_3695 510 ------TAAAAGTGAAAGTGAGAAGGATGTAGCTGAA----------TGG 543
BSNT_02070___ 545 AAGA----ACGAGATAAGTGTGAGGAAGAACTGGC-----CGCGTTTTTT 585
.||| |||.||.|| .|.||||| |||.| .||.||||||
BPUM_3695 544 CAGAAAACACGTGACAA---AGGGGAAG--CTGACATGATGGCATTTTTT 588
BSNT_02070___ 586 GCCGGCATCATAGAAGAAAAGCGAAACAAACCGGAACAGGATATTATTTC 635
||.|.||.|||.|||.|.||.||..||||.|..|...|.|||.|.|||||
BPUM_3695 589 GCAGACACCATTGAAAAGAAACGTCACAACCTTGGTGATGATTTAATTTC 638
BSNT_02070___ 636 TATTTTAGTGGAAGCGGAAGAAACAGGCGAGAAGCTGTCCGGTGAAGAGC 685
..|..|..|..|||||||.||.|..||.||.||.|||||.|..||.||.|
BPUM_3695 639 CCTCATCATTCAAGCGGAGGAGAATGGAGACAAACTGTCAGCAGATGAAC 688
BSNT_02070___ 686 TGATTCCGTTTTGCACGCTGCTGCTGGTGGCCGGAAATGAAACCACTACA 735
|.|||||.|||||.|..||.||.||..|.|||||.||.|||||.||.||.
BPUM_3695 689 TCATTCCATTTTGTAATCTTCTTCTTTTAGCCGGCAACGAAACAACCACC 738
BSNT_02070___ 736 AACCTGATTTCAAATGCGATGTACAGCATATTAGAAACGCCAGGCGTTTA 785
|||.||||.||.|||..|||||.||||.|.||||||..|||.||.|..||
BPUM_3695 739 AACTTGATCTCCAATATGATGTTCAGCTTGTTAGAACAGCCTGGTGCGTA 788
BSNT_02070___ 786 CGAGGAACTGCGCAGCCA---TCCTGAACTGATGCCTCAGGCAGTGGAGG 832
.||.|..|| ||| ||| |||||||||.||.||.|..||.|||||.|
BPUM_3695 789 TGAAGCGCT-CGC--CCAATCTCCTGAACTCATCCCACGTGCGGTGGAAG 835
BSNT_02070___ 833 AAGCCTTGCGTTTCAGAGCGCCGGCCCCGGTTTTGAGGCGCATTG----- 877
|.||..|.|||||..|.||.||.||.|| .||| ||||
BPUM_3695 836 AGGCTGTCCGTTTTCGTGCACCAGCTCC--------TGCG-ATTGTTCGT 876
BSNT_02070___ 878 -------CCAAGCGGGATACGGAGATCGGGGGGCACCTGATTAAAGAAGG 920
|.|| .|||||.||..|.||.|.|.|..||.|.|| ||||
BPUM_3695 877 TATGTCACAAA---AGATACAGAACTTGGAGAGAAAGTGTTGAA--AAGG 921
BSNT_02070___ 921 TG-----ATATGGTTTTGGCGTTTGTGGCATCGGCAAATCGTGATGAAGC 965
.| ||.||.|| |.||||.|.||.||.||.||.||.|||| |||
BPUM_3695 922 GGCGACAATGTGATT---GTGTTTCTTGCTTCCGCCAACCGAGATG-AGC 967
BSNT_02070___ 966 G--AAGTTTGACAGGCCGCACATG--TTTGATATCCGCCGCCATCCCAAT 1011
| ||.|||.|.| |||||||| |..|||||.|.|||||||||.|||
BPUM_3695 968 GTCAATTTTCAAA---CGCACATGAATACGATATACACCGCCATCCTAAT 1014
BSNT_02070___ 1012 CCGCATATTGCGTTT-GGCCACGGCATCCATTTTTGCCTTGGGGCCCCGC 1060
||.||||||| |||| ||.|||||.||||||||.||||||||.||.||.|
BPUM_3695 1015 CCTCATATTG-GTTTCGGGCACGGTATCCATTTCTGCCTTGGCGCACCAC 1063
BSNT_02070___ 1061 TTGCCCGTCTTGAAGCAAATATCGCGTTAACGTCTTT--------GATTT 1102
|.||.||||||||||||..||..||..|||.|..||| |||.|
BPUM_3695 1064 TAGCACGTCTTGAAGCATGTACAGCTATAAAGATTTTCATAGAACGATAT 1113
BSNT_02070___ 1103 ------------CTGCTTTTCCTCATATGGAGTGCGTCAGTATCACTCCG 1140
||.||| ||.|||| .||||
BPUM_3695 1114 GAGGCGCTAGAGCTCCTT----TCTTATG----------------TTCCG 1143
BSNT_02070___ 1141 ATTGA-AAACAGTGTGATATACGGA-TTAAAGAGCT-----TCCGTGTGA 1183
| ||| ||.|||....||.||.||| |.|||||||| |.|||||.|
BPUM_3695 1144 A-TGACAAGCAGCAGCATGTATGGACTGAAAGAGCTGAAACTGCGTGTCA 1192
BSNT_02070___ 1184 AA------ATATAA 1191
.| ..||||
BPUM_3695 1193 CACCTCGTTCATAA 1206
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