Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00904 and BPUM_3694
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:37
# Commandline: needle
# -asequence dna-align/BSNT_00904.1.24716.seq
# -bsequence dna-align/BPUM_3694.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00904-BPUM_3694.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00904-BPUM_3694.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00904
# 2: BPUM_3694
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 740
# Identity: 324/740 (43.8%)
# Similarity: 324/740 (43.8%)
# Gaps: 322/740 (43.5%)
# Score: 554.5
#
#
#=======================================
BSNT_00904 1 --------------------------------------ATG-TCCAAAGT 11
.|| |.||.||.
BPUM_3694 1 TTGAAGAAAGTAGGAAGGGGAGAGCGGCTTGTGGCGGATTGCTACAGAGG 50
BSNT_00904 12 GGATAGAAGAATAAC---CAA---AAGCCAAGAGGCTATTAA-AATAGC- 53
||||| |.| ||| ||.|.|||..||.||||| ||.|||
BPUM_3694 51 GGATA-------AGCGCGCAACGGAATCAAAGCAGCAATTAAGAAAAGCA 93
BSNT_00904 54 -----TC--TGATTGAGCTGATGACTGAA------AAAAGTTTTGATCAT 90
|| |.|||.||| || ||..||| ||.|.||.||
BPUM_3694 94 TTATTTCAATTATTAAGC-GA-GAAAGAATGGGGGAAGATTTCTG----- 136
BSNT_00904 91 ATTACGATTAAGGAAATTT--CTGAAAG-----GGCAAATGTAAACCGGG 133
||| ||| |||| | ||||| |||| |..||||..
BPUM_3694 137 --TAC-----AGG--ATTTGAC-GAAAGTGGCAGGCA----TCCACCGCA 172
BSNT_00904 134 GAACAATCTATCTTCATTACTTA-GATAAATTTGATCT-----ATTAGAA 177
.|||..|.||||..||||| |.| |||||||||||||| |..||
BPUM_3694 173 CAACCTTTTATCAGCATTA-TGAGGATAAATTTGATCTTGCCCAGCAG-- 219
BSNT_00904 178 AAAATTATGGAAGAGCATATAAACAATATGGGGGATTTT--TGTGAGTCG 225
.|.|||||.||| ||| ||| |||||
BPUM_3694 220 ---GTGATGGATGAG------------ATG------TTTGATGTGA---- 244
BSNT_00904 226 GCAGCTGAAATG-GACTGGATTGAATCGACTGTACACTGCATGGAATACC 274
||||.|| |.| |||....||.||||||| .|||.|
BPUM_3694 245 -----TGAAGTGCGCC---ATTTTTGCGCCTGTACA------AGAAGA-- 278
BSNT_00904 275 TTG----------AGAG---------TAATTATTTATTCTTTTCGACGAT 305
|| |||| ||..|||.||||.|| ||||
BPUM_3694 279 -TGATTTAGAAAAAGAGCATCCGGCATATGTATATATTTTT-----CGAT 322
BSNT_00904 306 GTTA---------GCCAGTG------AAGGCGCTCGATATTTTCGCAGTC 340
.||| ||.||.| ||||.| ||| ||
BPUM_3694 323 TTTATCAGCATTTGCAAGAGCATGAAAAGGAG-----TAT-----CA--- 359
BSNT_00904 341 AGTTC-CTT-------------AAGTTTAATATCGAAGA----GTTC--- 369
|.||| ||| .||.|||||||..|.|| ||||
BPUM_3694 360 AATTCTCTTGAAACGAGGGCGAGAGCTTAATATTCATGAAACGGTTCGGG 409
BSNT_00904 370 ---------AGGAAAGATGTAGATGTAACGAAAGGCAAGA----ATTAC- 405
|.|||||.|.| |.|...|.|| |||| .||.|
BPUM_3694 410 CTTTTTTTGAAGAAAGTTTT---TCTTTGGGAA---AAGAGGGGGTTGCA 453
BSNT_00904 406 GGC-CAAAG----------------------------TGAAGATGTCATT 426
||| ||||| ||.|||.|..|||
BPUM_3694 454 GGCTCAAAGCCTGATCCGCAACTCGTTCCTATCGACATGCAGAAGCAATT 503
BSNT_00904 427 -GTTGAATTTATAGCAAATGCTTAC----GTAGGGGTAGTGGAATGGTGG 471
||| |||| .||||||| |.|.||.| |||||||||
BPUM_3694 504 CGTT--ATTT-------CTGCTTACATTGGAACGGCT----GAATGGTGG 540
BSNT_00904 472 TTAAAAAACGAAATG----CCTTATCCGCC----TCGTGTCATGGCAGAA 513
.| .|.||.|.| ||.|||.|.|| | |.|||||
BPUM_3694 541 CT----GAGGACAGGTAGACCGTATTCACCAGAAT----TTATGGC---- 578
BSNT_00904 514 AAAGTGGGGGAGTTATTAGAGCGGATTTTATAA------- 546
|||.|.|..||.|.||| .|.||.|.||
BPUM_3694 579 AAATTCGATGATTCATT------TAATTGAAAATCAATAG 612
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