Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06198 and BPUM_3687
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:40
# Commandline: needle
# -asequence dna-align/BSNT_06198___yycH.1.24716.seq
# -bsequence dna-align/BPUM_3687___yycH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06198___yycH-BPUM_3687___yycH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06198___yycH-BPUM_3687___yycH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06198___yycH
# 2: BPUM_3687___yycH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1519
# Identity: 924/1519 (60.8%)
# Similarity: 924/1519 (60.8%)
# Gaps: 281/1519 (18.5%)
# Score: 2373.0
#
#
#=======================================
BSNT_06198___ 1 ---------ATGAAGCGTGAAAATATAAAAACGATATTACTTACGGTACT 41
|||||||||||.|...|.|||||.|||.||.|.||..|.||
BPUM_3687___y 1 ATGATTGGGATGAAGCGTGAGACCTTTAAAACCATAATATTGACAATCCT 50
BSNT_06198___ 42 CGTCGTCATCAGTCTTGTTTTTACATGGGGGATATGGACGTTCCAGCCAA 91
..|.|..|||||||||||.|||||.|||...||.||||.|||||||||
BPUM_3687___y 51 AATTGCGATCAGTCTTGTGTTTACGTGGAATATTTGGATGTTCCAGCC-- 98
BSNT_06198___ 92 ACTTTTC-TGAAGGCTCATCCTCAACAGA----GTCTACT--GTTCGTGA 134
..|| ||.|||..|| ..|||| |.| ||| |.|||| |
BPUM_3687___y 99 ---CGTCATGCAGGACCA-----GGCAGATGCCGGC-ACTCAGGTCGT-A 138
BSNT_06198___ 135 GAAACACAAAATCGAAAAAACCA---------CCCAAAAGC--------T 167
||||||.| |||.|.|.|| ||.|.|||| |
BPUM_3687___y 139 GAAACAAA-----GAAGATATCAAGCGATGAGCCTAGAAGCCTCATTGAT 183
BSNT_06198___ 168 GTC-TGAAACGGTAAGGCCGAGGGACATGTTTATTCATGATGACGGCGCT 216
||| |||| ||||.||||.|||||.||.|||....|.||.|..
BPUM_3687___y 184 GTCGTGAA--------GCCGCGGGAGATGTTCATCCATTCAAATGGGGAG 225
BSNT_06198___ 217 CATTACAAAGTGGATGACAATGCCCTCTATGAAGAAATT-TGGTCTGACT 265
||||..|||||||||.|.||.|..||||.|.|| ||.|| |||..|||..
BPUM_3687___y 226 CATTTGAAAGTGGATCAAAAGGAACTCTTTCAA-AACTTCTGGAATGATG 274
BSNT_06198___ 266 TGCCGCATTGGGATGTAAAAGGAATTAAAGATATTTCGGATCAGTA---T 312
||...|.|||||||||.||||..|||...|||.|.||.|||||.|| |
BPUM_3687___y 275 TGAGCCTTTGGGATGTGAAAGAGATTTCGGATGTGTCAGATCAATATTCT 324
BSNT_06198___ 313 GACAAGGCTG-GATTCAAGAGCTGGTTTTATGGAATAGGCGGTTC---TG 358
|| ||.| .|||.||||..|..||.|||||||..||.|| .| .|
BPUM_3687___y 325 GA----GCAGAAATTTAAGAATTTCTTCTATGGAAACGGAGG-ACAGGGG 369
BSNT_06198___ 359 AAGCCA----AGCTTGACTTGCAATTCAGCGATACGATTCCGATTGATAT 404
|||.|| |.|||| || ||||..||..||||||||||||||||
BPUM_3687___y 370 AAGACATTGGATCTTG---TG---TTCAATGACCCGATTCCGATTGATAT 413
BSNT_06198___ 405 TTTCCAAACACTGTTTAAATGGTCTAATCAGTCGTTTGAATACAGTTCGT 454
.||||||.|.||||||||||||.|.||..||||..|.|||||||..||||
BPUM_3687___y 414 ATTCCAAGCGCTGTTTAAATGGCCGAACAAGTCCATCGAATACAACTCGT 463
BSNT_06198___ 455 TTGACC--AT-ATTCTGATCCCGTTC------AATGAAACAAAAGCGAAC 495
||||.| || |||.|| |||||| .|.|| .||.||.||.
BPUM_3687___y 464 TTGATCGGATGATTGTG---CCGTTCTCCCAGCAGGA---TAAGGCCAAT 507
BSNT_06198___ 496 AAGAAAATCTATTTGGTGTCTTACAGCAAGCAGCTCA----TTCTCGAAG 541
||||||.|.||||||||.||.|||||||||.| | |.||.||..
BPUM_3687___y 508 AAGAAAGTTTATTTGGTTTCATACAGCAAGGA----AACGGTGCTTGAGC 553
BSNT_06198___ 542 TGACGGTTGAATCGGCGAACTACCGGAACATTATGAATGAC----TTGAA 587
||||..|.||.||.||.|||||.||.||..|.||| ||| |.|
BPUM_3687___y 554 TGACAATAGAGTCTGCTAACTATCGAAATCTCATG---GACAGTATCG-- 598
BSNT_06198___ 588 AAACAGGCAATCAA----ATATGCCG----GCGTTCAGTTT--GTTCTCC 627
|||.|..|||| |.|||||| .||.||..|.| ||||||
BPUM_3687___y 599 ---CAGCCGCTCAAAACGAGATGCCGCGCTACGATCTCTATACGTTCTC- 644
BSNT_06198___ 628 ATTGGCTCAAA---GAA---AGAGTTCTTGCTGCCGAACAAA-------C 664
|| |.|| ||| |||.|||.|.||.||| |.||| |
BPUM_3687___y 645 --TG---CGAATTCGAAACGAGATTTCCTCCTTCCG-AGAAAGCAAGAGC 688
BSNT_06198___ 665 CGCTTACGATGGA--CAAAAAAG-AATTTGTCACTGAATCGATTAAAACA 711
.|||| || |.||||.| ..|||.|| |||.|||||||.|||
BPUM_3687___y 689 AGCTT------GAATCGAAAATGTTCTTTATC---GAAACGATTAAGACA 729
BSNT_06198___ 712 AATACCTTTAAGCAGGCTTTGTTTAGTGATCCGAGCATTGTAAGAGAAGA 761
|..|..||.|||.|.|||.||||||..||.|||||..||||..|.||.||
BPUM_3687___y 730 AGCAAATTCAAGGACGCTCTGTTTACGGACCCGAGTCTTGTTGGTGAGGA 779
BSNT_06198___ 762 TTCGAATTACAAC--AACAGAAATGTGCTGACAGATGGGATCAGCCGTTT 809
.||.||||..||| |||.| |||.| ||||||||.|..||||||.|
BPUM_3687___y 780 GTCTAATTTAAACCGAACGG---TGTAC--ACAGATGGCACAAGCCGTCT 824
BSNT_06198___ 810 AGATGTGAATCTAA---GCCAGCGACAGGTGCAATTCCAACAGCGCAATT 856
.||.|..||||.|| .|||.|| || |.||||..||.||.|||||..
BPUM_3687___y 825 TGAAGCCAATCAAAAAGACCACCG-CA--TCCAATATCAGCACCGCAACA 871
BSNT_06198___ 857 TGGTGC-AGAGCA-CATCCTAT--CAAACAGGTGAATTAATCAAAAAGAG 902
| | |.|||| ||.|.|.| |||||.||.||.||.||.| ||
BPUM_3687___y 872 T----CAACAGCAGCACCGTTTTCCAAACGGGCGATTTGATTA-----AG 912
BSNT_06198___ 903 CCAA-----AAATACCTTGAGGATACCGGAAGCTGGACGGATCACTATCA 947
|.|| ||.||..|..|.|||||.||.||||..||.|||.|||||||
BPUM_3687___y 913 CGAAGTGTGAAGTATTTCAATGATACGGGGAGCTTTACCGATGACTATCA 962
BSNT_06198___ 948 AT--TTT----TCAATATTAATGACAGCCAGCAGCTGAGCTTCTATATCT 991
|| ||| |||||| .||.|||||||||...|||..||||.|
BPUM_3687___y 963 ATACTTTGGCATCAATA------GCAACCAGCAGCTTTCCTTTAATATGT 1006
BSNT_06198___ 992 TTATGGATCAGATCCCGGTCATTAACAGCACCGCCAAA----CCTTTCGG 1037
||||||||....|.|||.||.|.|||||.| |||| ||.|||||
BPUM_3687___y 1007 TTATGGATGGCCTGCCGATCGTCAACAGTA----CAAAGCACCCATTCGG 1052
BSNT_06198___ 1038 GGCGACATCGGCGATTACGGTGCAATGGGCGAATGATGATATTCTCAGCT 1087
|..|||.| |..||...||.||.|||||||||||.||.||..|.|..|
BPUM_3687___y 1053 GATGACCT---CTCTTGAAGTACAGTGGGCGAATGACGACATCTTAAATT 1099
BSNT_06198___ 1088 ATAAGCGGCCGAATTACAGTCTCGG-AACGAATCCGATTAAAACAAGTGA 1136
|.|||||.||.||.||.|.|||.|| ||| ||..|||.|.| |||||
BPUM_3687___y 1100 ACAAGCGTCCAAACTATATTCTAGGCAAC-AAAGCGAGTCA---AAGTG- 1144
BSNT_06198___ 1137 AACAG----AGCTCATGAGCGGCAGCGAAGTG-AGGATGCTGCTT--TCG 1179
||||| ||||.||||.|||.|..||..|| |.|| ||| |||
BPUM_3687___y 1145 AACAGGTCAAGCTGATGAACGGGACAGAGTTGAAAGA-----CTTAATCG 1189
BSNT_06198___ 1180 --AAACAAACCGCTTATGAT-AC--GGACAAAATTGATCAGATCTTCCTT 1224
||.||.||....|||||| || .||.||||||||.||.||.||||..
BPUM_3687___y 1190 TCAAGCAGACGAAATATGATGACCTTGAGAAAATTGAACAAATTTTCCCG 1239
BSNT_06198___ 1225 GCTTATCAA-TTGGT-------------ATCAACATCAACCAACGATGAT 1260
||.|||||| .||.| |||||.|||| |.|||||.|
BPUM_3687___y 1240 GCCTATCAAGCTGCTTCCACCGCATCAGATCAAGATCA---AGCGATGTT 1286
BSNT_06198___ 1261 CCTCTCGTTGAATTGGAACCGGTTTGG-GCGATGAAAGTA-AATGGAAAA 1308
..|||.| .||||.||.||.||| || |||||| || ||.||.|||
BPUM_3687___y 1287 TGTCTGG-----CTGGAGCCAGTATGGTGC-ATGAAA-TACAACGGTAAA 1329
BSNT_06198___ 1309 ATTGTGCCGATTACAA----AGGATTTATT----GAGGAAGGAGGGGGCT 1350
|..|| |||| |.| |.|||||.|| |||| ||||.|.|
BPUM_3687___y 1330 ACCGT---GATT-CTATCGCATGATTTGTTGACAGAGG--GGAGCGAG-- 1371
BSNT_06198___ 1351 AA-CAGTGGAGTGGAATAA 1368
|| || |||||||||||||
BPUM_3687___y 1372 AATCA-TGGAGTGGAATAA 1389
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