Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06195 and BPUM_3684
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_06195___yyxA.1.24716.seq
# -bsequence dna-align/BPUM_3684___yyxA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06195___yyxA-BPUM_3684___yyxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06195___yyxA-BPUM_3684___yyxA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06195___yyxA
# 2: BPUM_3684___yyxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1253
# Identity: 876/1253 (69.9%)
# Similarity: 876/1253 (69.9%)
# Gaps: 115/1253 ( 9.2%)
# Score: 2905.5
#
#
#=======================================
BSNT_06195___ 1 ATGGTGGATTACGAACGTGAGGAAGAACATACTACTCCTGAACAGCCAAA 50
||||||| |.||.||.|.||| .||.| |||| .|
BPUM_3684___y 1 ---GTGGATT---ATCGCGATGTAGA-----------GTGGA-AGCC-GA 31
BSNT_06195___ 51 GA-GAAGCAAAAAAGGATATTTTCTTTCGAGTCTGATTGGCGTGATT-GT 98
|| ||||||.||||||||||||.||.||..|||||||.||.|| ||| ||
BPUM_3684___y 32 GACGAAGCAGAAAAGGATATTTCCTGTCTGGTCTGATCGGTGT-ATTGGT 80
BSNT_06195___ 99 CGGTGCCGTATTAATGG----CGTTTATCATGCCGTACCTTTCAAATGAA 144
.||.||..|.||||||| |.||| |.||.||..|.|||
BPUM_3684___y 81 AGGAGCTTTTTTAATGGGATTCTTTT----TCCCCTATGTATCA------ 120
BSNT_06195___ 145 GGGCTGGATACAGGCG------CCTTAGATCAGCAGCAAAACAACAATGG 188
|||.| |.||| ||||.|....||||||.|||....||||
BPUM_3684___y 121 -----GGACA-AAGCGGCAGTCCCTTTGGGTGGCAGCAGAACGGAGATGG 164
BSNT_06195___ 189 CCGGGAATCAATCAG-----------GACGGTGAATGTCAGTGTCAACAA 227
.|..|.|.|| ||| |||.||.|||||.|.||||||..|
BPUM_3684___y 165 GCAAGCAGCA--CAGGGCCCTTTAAAGACCGTCAATGTGAATGTCAATGA 212
BSNT_06195___ 228 TGCCGTCACCAAGATTGTCAGC-AATGTGTCGCCCGCCGTTGTCGGTGTT 276
|||.|||||.||..|.|| |.| |||.||||.....|.||||||||.|||
BPUM_3684___y 213 TGCGGTCACAAAAGTCGT-ATCGAATATGTCAGATACGGTTGTCGGCGTT 261
BSNT_06195___ 277 GTGAACATCCAAAAATC-AGATATTTGGGGAGAGAGCGGCGAGGCTGGGA 325
.|.||.||||||||.|| ||.| ||||||.|||..||||.|||||.||.|
BPUM_3684___y 262 ATTAATATCCAAAAGTCGAGCT-TTTGGGAAGAAGGCGGAGAGGCAGGCA 310
BSNT_06195___ 326 GCGGCTCTGGCGTCATCTATAAGAAAAA---TGACAACTCCGCTTATGTC 372
||||.||.||.||.||.||||||||||| ||||| ||..||||.|.
BPUM_3684___y 311 GCGGGTCAGGTGTGATTTATAAGAAAAAGGGTGACA---CCTTTTATATT 357
BSNT_06195___ 373 GTGACCAACCATCATGTCATCGAAGGCGCTTCCCAAATTGAAATCAGCTT 422
|||||||||||||||||||||.||||.|| .||.||||||
BPUM_3684___y 358 GTGACCAACCATCATGTCATCAAAGGTGC-----------CAACCAGCTT 396
BSNT_06195___ 423 GAA---AGACGGTTCACG-TGTATCA---------GCTGATCTTGTCGGC 459
||| ||.| ||||.| ||...|| ||..||||||||||.
BPUM_3684___y 397 GAAGTGAGTC--TTCAGGATGGGACAAGGATTGGTGCCAATCTTGTCGGA 444
BSNT_06195___ 460 AGCGACCAGCTGATGGACCTTGCCGTT-TTACGGGTGAAAAGCGATAAAA 508
|||||.|||||.|||||..|.||.||| |.|| .||.|||||.|||||.|
BPUM_3684___y 445 AGCGATCAGCTCATGGATTTAGCGGTTCTCAC-CGTCAAAAGTGATAAGA 493
BSNT_06195___ 509 TTAAAGC-AGTCGCCGATTTCGGAAATTCAGATAAAGTGAAGTCTGGCGA 557
|.|||| |..|||.|..|||||.||||||||..|.||||||.|.||.||
BPUM_3684___y 494 -TCAAGCAAACCGCAGCCTTCGGTAATTCAGACCATGTGAAGCCCGGTGA 542
BSNT_06195___ 558 GCCGGTTATTGCGATCGGGAACCCGTTAGGCCTTGAGTTTGCAGGCTCTG 607
|||.||.||.||.||.||.||.||.|||||.|||||.||.||||||||||
BPUM_3684___y 543 GCCTGTAATCGCCATTGGAAATCCATTAGGGCTTGAATTCGCAGGCTCTG 592
BSNT_06195___ 608 TCACACAAGGCGTCATCTCAGGTACGGAGAGGGCGATCCCAGTGGATTCA 657
||||||||||.|||||.|||||.|||||..|.|||||.||.|||||.||.
BPUM_3684___y 593 TCACACAAGGTGTCATTTCAGGAACGGAACGTGCGATTCCTGTGGACTCG 642
BSNT_06195___ 658 AACGGTGATGGACAGCCTGACTGGAATGCAGAAGTCCTGCAAACAGATGC 707
||.||.||.||||||.|.||.||||||||.||.||.||||||||||||||
BPUM_3684___y 643 AATGGAGACGGACAGGCGGATTGGAATGCGGAGGTACTGCAAACAGATGC 692
BSNT_06195___ 708 GGCCATTAACCCTGGGAACAGCGGCGGCGCTTTGTTAAATATGGATGGGA 757
.|||||.||.||.|||||||||||.||.||..||.|.||||||||.||.|
BPUM_3684___y 693 CGCCATCAATCCAGGGAACAGCGGTGGTGCCCTGATCAATATGGACGGAA 742
BSNT_06195___ 758 AGGTCATTGGCATCAATTCAATGAAAATTGCCGAGTCGGCGGTTGAAGGG 807
|.||.||.||.||.||.||||||||.||||||||.||.|..||.|||||.
BPUM_3684___y 743 AAGTGATCGGTATTAACTCAATGAAGATTGCCGAATCAGAAGTAGAAGGC 792
BSNT_06195___ 808 ATTGGCCTGTCGATTCCATCTAAGCTCGTGATCCCTGTGATAGAGGATTT 857
||.||.|||||.||.|||.|.||.|||||.||||||||.|||||||||||
BPUM_3684___y 793 ATCGGACTGTCTATCCCAGCGAATCTCGTCATCCCTGTCATAGAGGATTT 842
BSNT_06195___ 858 AGAGAGATACGGAAAGGTCAAACGCCCGTTCCTTGGCATTGAGATGAAAT 907
||||.|.||||||.||||.|||||.||||.|||.||..|||..|||||||
BPUM_3684___y 843 AGAGCGCTACGGAGAGGTGAAACGTCCGTACCTAGGTGTTGGCATGAAAT 892
BSNT_06195___ 908 CCCTAAGC-GACATCGCAAGCTATCATTGGGATGAAACATTAAAGCTTCC 956
|.|.||| ||.||.||.|||||.||.||||||||||||||.|||||.||
BPUM_3684___y 893 -CATTAGCAGATATTGCGAGCTACCACTGGGATGAAACATTGAAGCTGCC 941
BSNT_06195___ 957 TAAGAACGTCACCAAT--GGAGTGGTTGTGATGGGTGTAGACGCCTTT-T 1003
....|||||||| || ||.||.||.||||||.||||.|| |||||| |
BPUM_3684___y 942 ATCTAACGTCAC--ATCAGGCGTTGTCGTGATGAGTGTCGA-GCCTTTGT 988
BSNT_06195___ 1004 CACCTGCCGGAAAAGCAGGGCTGAAGGAACTGGATGTCATCACGGAATTT 1053
|.||.||.||||||||.|||||.||.||.|||||||||.||||....|||
BPUM_3684___y 989 CTCCGGCAGGAAAAGCGGGGCTAAAAGAGCTGGATGTCGTCACTTCCTTT 1038
BSNT_06195___ 1054 GACGGATACAAAGTAAATGATATTGTTGACCTGCGAAAACGGCTT--TAT 1101
||.||..|.|..|||.|..||||.||.|||||.||.|| |..|| |||
BPUM_3684___y 1039 GATGGCAAGAGTGTACAGAATATCGTAGACCTTCGTAA--GTATTTATAT 1086
BSNT_06195___ 1102 CAGAAAAAAGTCGGTGACCGGGTGAAGGTGAAGTTTTACCGCGGCGGAAA 1151
||.||.||||||||.|||..|||.|||||..||||||||||..|||||||
BPUM_3684___y 1087 CAAAAGAAAGTCGGCGACAAGGTAAAGGTACAGTTTTACCGAAGCGGAAA 1136
BSNT_06195___ 1152 AGAAAAATCTGTAGACATCAAGCTGTCCTC-CGCAGACCAATTAGGCAGT 1200
..|||||||.|||||.|||||.|| |.||| ..|.||||.|||.|||.|.
BPUM_3684___y 1137 GAAAAAATCAGTAGAAATCAAACT-TTCTCAAACCGACCGATTCGGCGGA 1185
BSNT_06195___ 1201 TAA 1203
|.|
BPUM_3684___y 1186 TGA 1188
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