Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01510 and BPUM_3650

See Amino acid alignment / Visit BSNT_01510 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:03
# Commandline: needle
#    -asequence dna-align/BSNT_01510.1.24716.seq
#    -bsequence dna-align/BPUM_3650.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01510-BPUM_3650.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01510-BPUM_3650.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01510
# 2: BPUM_3650
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 242
# Identity:     123/242 (50.8%)
# Similarity:   123/242 (50.8%)
# Gaps:          73/242 (30.2%)
# Score: 246.5
# 
#
#=======================================

BSNT_01510         1 ATGATGAAAAATAAAGTAAAAGAGCTGAGGGCACGCTTCGGCTATTCTCA     50
                        |||||||||..|.||||||||||..|.||.||....||   ||...|
BPUM_3650          1 ---ATGAAAAATCGATTAAAAGAGCTTCGTGCGCGTGATGG---TTTGAA     44

BSNT_01510        51 GGAAA---AACTCG------GAGAAACGGTCGGCGTCACAAGACAGACTG     91
                     ..|||   ||||.|      |.|.||.|||    .||.|  |.|||||..
BPUM_3650         45 CCAAACTGAACTTGCCAATCGTGCAAAGGT----TTCTC--GTCAGACCA     88

BSNT_01510        92 TGGCAGC--GATTGAAAAAGGCGA--TTATGTTCCCTCACT-------GC    130
                     |  ||||  .||.|||..||..||  |.|||  ||.||.||       ||
BPUM_3650         89 T--CAGCTTAATGGAACGAGATGAATTAATG--CCGTCTCTCTTGCTCGC    134

BSNT_01510       131 TGTTAGCACTGAAAATCTGCAAAGCCTTC--------TCCATGAA--AAT    170
                     ||||                 ||||.|||        |.||.|||  .||
BPUM_3650        135 TGTT-----------------AAGCTTTCACGAATTTTTCAGGAACCCAT    167

BSNT_01510       171 GGAGGATGTCTTTT--GGTTAGAGGAGGA-AAACTAA-----    204
                     .||  |.||.||||  ..||.|||||||| .|||||.     
BPUM_3650        168 TGA--ACGTATTTTTCTATTCGAGGAGGATGAACTATCATGA    207


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