Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01510 and BPUM_3650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_01510.1.24716.seq
# -bsequence dna-align/BPUM_3650.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01510-BPUM_3650.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01510-BPUM_3650.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01510
# 2: BPUM_3650
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 242
# Identity: 123/242 (50.8%)
# Similarity: 123/242 (50.8%)
# Gaps: 73/242 (30.2%)
# Score: 246.5
#
#
#=======================================
BSNT_01510 1 ATGATGAAAAATAAAGTAAAAGAGCTGAGGGCACGCTTCGGCTATTCTCA 50
|||||||||..|.||||||||||..|.||.||....|| ||...|
BPUM_3650 1 ---ATGAAAAATCGATTAAAAGAGCTTCGTGCGCGTGATGG---TTTGAA 44
BSNT_01510 51 GGAAA---AACTCG------GAGAAACGGTCGGCGTCACAAGACAGACTG 91
..||| ||||.| |.|.||.||| .||.| |.|||||..
BPUM_3650 45 CCAAACTGAACTTGCCAATCGTGCAAAGGT----TTCTC--GTCAGACCA 88
BSNT_01510 92 TGGCAGC--GATTGAAAAAGGCGA--TTATGTTCCCTCACT-------GC 130
| |||| .||.|||..||..|| |.||| ||.||.|| ||
BPUM_3650 89 T--CAGCTTAATGGAACGAGATGAATTAATG--CCGTCTCTCTTGCTCGC 134
BSNT_01510 131 TGTTAGCACTGAAAATCTGCAAAGCCTTC--------TCCATGAA--AAT 170
|||| ||||.||| |.||.||| .||
BPUM_3650 135 TGTT-----------------AAGCTTTCACGAATTTTTCAGGAACCCAT 167
BSNT_01510 171 GGAGGATGTCTTTT--GGTTAGAGGAGGA-AAACTAA----- 204
.|| |.||.|||| ..||.|||||||| .|||||.
BPUM_3650 168 TGA--ACGTATTTTTCTATTCGAGGAGGATGAACTATCATGA 207
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