Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06143 and BPUM_3602
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence dna-align/BSNT_06143___gntK.1.24716.seq
# -bsequence dna-align/BPUM_3602___gntK.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06143___gntK-BPUM_3602___gntK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06143___gntK-BPUM_3602___gntK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06143___gntK
# 2: BPUM_3602___gntK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1715
# Identity: 980/1715 (57.1%)
# Similarity: 980/1715 (57.1%)
# Gaps: 343/1715 (20.0%)
# Score: 2364.5
#
#
#=======================================
BSNT_06143___ 1 ATG-------ACTA----GTTATATGTTAGGAATCGATATCGGCACGACA 39
||| ||.| ||.||..||| |.|||||.||.||.|||
BPUM_3602___g 1 ATGAAGGGGAACCAGGCGGTAATTGGTT-----TGGATATTGGAACAACA 45
BSNT_06143___ 40 AGCACAAAAGCTGTGCTGT-------TCAGTGAAAACGGAGATGTGGTAC 82
||.|||||.||.||.|||| ||||.|.||| ||..||.
BPUM_3602___g 46 AGTACAAAGGCGGTTCTGTTTGGACCTCAGGGGAAA-------GTATTAG 88
BSNT_06143___ 83 AGAAAGAAAGCA-TCGGCTACCC------GCTCTATACA--CCGGACATC 123
.| ||||| ||.|.| || |||| ||.|| || ||.|
BPUM_3602___g 89 CG-----AAGCATTCAGTT--CCTTATGAGCTC-ATTCAGCCC---CAGC 127
BSNT_06143___ 124 TCAACA---GCTGAACAAAACCCGGAAGAGATATTTCAGGCAGTCATCCA 170
||.|| |.|||.||..||||.||..|||||||..|.||.|||||
BPUM_3602___g 128 -CAGCATGGGTTGAGCAGGACCCTGAGAAGATATTAGAAGCCGTCAT--- 173
BSNT_06143___ 171 TACAACAGCGAGA-----ATT-AC-AAAACAGCATCCCGA-AAAACAGAT 212
|.|||..|..||| ||| || |||.|||||| ..|| |||..|.||
BPUM_3602___g 174 TGCAAGTGTAAGAGGTGCATTGACGAAAGCAGCAT-TTGATAAAGAAAAT 222
BSNT_06143___ 213 CTCTTTCATTTCGTTCAGCAGCGCCAT--GCACAGCG----------TCA 250
|| |.|..|||.||..|| |.|||||| |.|
BPUM_3602___g 223 CT----------GATAGGCATCGGAATAAGTACAGCGATGCATTCCTTAA 262
BSNT_06143___ 251 TTGCAATCGACGAAAATGACAAGCCGCTGACG-CCATGCATCACATGGGC 299
|||..||.||..|..|||..|||.||.|.||| .|| |.||||..|||||
BPUM_3602___g 263 TTGTGATGGATCAGGATGGAAAGACGTTAACGAACA-GTATCATTTGGGC 311
BSNT_06143___ 300 CGACAACCGAAGTGAAGGCTGGGCGCATAAG--------ATCAAAGAGGA 341
.||.|||.||||||.| |.|.||| ||||||...||
BPUM_3602___g 312 TGATAACAGAAGTGCA--------GAACAAGCGAAACGAATCAAATCAGA 353
BSNT_06143___ 342 ATTGAACGG-----ACATGAGGTGTACAAACGTACGGGAACACCGATTCA 386
..||.|.|| ||| |.||.|||.|.||.||.||||||||.||
BPUM_3602___g 354 TATGGATGGCTTCCACA-----TTTATAAAAGGACAGGTACACCGATCCA 398
BSNT_06143___ 387 TCCGATGGCACCG--TTAAGTAAAATTGCCTGGATCACGAATGAAAGAAA 434
|||.|||.||||| ||.| |||||....||| ||||||||||
BPUM_3602___g 399 TCCAATGTCACCGCTTTCA--AAAATACGGTGG-------ATGAAAGAAA 439
BSNT_06143___ 435 AGAAATCG-----CTTC--CAAGGCA--AAAAAATATATCGGCATCAAAG 475
.|..|.|| |||| .|||||| ||||..|||.||| |||||||
BPUM_3602___g 440 TGGCACCGGATGTCTTCAAGAAGGCAGCAAAATTTATTTCG--ATCAAAG 487
BSNT_06143___ 476 AATACATTTTTAAACAGCTGTTCAATGAGTATGTCATCGATTACTCCTTG 525
||||.|||.||.|.||..|.|||..|.||||||||.|||||||.||..|.
BPUM_3602___g 488 AATATATTCTTTATCATTTCTTCGGTCAGTATGTCGTCGATTATTCAATC 537
BSNT_06143___ 526 GCATCAGCGACAGGCATGAT-GAACCTGAAAGGCTTGGATTGGGACGAAG 574
||.|||||.||.||..||.| .||...||||.|||| .|.|||||.||..
BPUM_3602___g 538 GCTTCAGCAACGGGACTGTTCCAATTGGAAACGCTT-CAATGGGATGAGA 586
BSNT_06143___ 575 AGGCACTGCGCATCGCAGGCA-TCACGCCGGA-TCACTTATCCAAACTCG 622
||||.||.||.||.||.||.| |.|.|| || |||..||||..|.||.|
BPUM_3602___g 587 AGGCGCTTCGTATTGCTGGAATTGAAGC--GAGTCAACTATCTGAGCTTG 634
BSNT_06143___ 623 TGCCGA--------CAACCCAGATCTTTCAGCACTGCAGCACGGAAATAG 664
|.||.| ||||..|| ||.|||.|||| |.||.||.|
BPUM_3602___g 635 TTCCAACGACGTATCAACTGAG-------AGGACTTCAGC-CAGAGATTG 676
BSNT_06143___ 665 CGATCCAAATGGG-AATCGATCCGGAA---ACGCCTTTTGTCATCGGCGC 710
|..|.|..||||| |.|.|| ||| ||.||.||||||||.||.||
BPUM_3602___g 677 CACTGCGCATGGGCATTAGA----GAAGATACACCATTTGTCATTGGTGC 722
BSNT_06143___ 711 CAGCGACGGCGTGCTGTCCAACCTCGGCGTCAACGCCATT----AAAAAG 756
.|..||.||.||.||..|.||..|.||.||....||.||| ||
BPUM_3602___g 723 GAATGATGGTGTTCTAGCGAATTTAGGTGTGGGTGCGATTGGTCAA---- 768
BSNT_06143___ 757 GGCGAAATCGCCGTCACCATCGGAACAAGCGGTGCCATCCGGACGATTAT 806
||.||..|.||.||.||.|||||.|||||||||||..||||.||..||.|
BPUM_3602___g 769 GGAGAGGTGGCTGTTACGATCGGGACAAGCGGTGCGGTCCGTACAGTTGT 818
BSNT_06143___ 807 TGACAAGCCGCAA--ACCGATGAAAAAGGGAGAATTTTTTGCTATGCCTT 854
.|||||.| ||| ||.|||||..||...||||..||.|||||||||.|
BPUM_3602___g 819 AGACAAAC--CAATTACAGATGAGCAATCAAGAACGTTCTGCTATGCCCT 866
BSNT_06143___ 855 GACGGACAAGCATTGGGTTATTGGGGGACCTGTGAACAATGGGGGCATCG 904
|||.||.||||||||||||.|.||.|||||....||.|||||.||.|||.
BPUM_3602___g 867 GACAGATAAGCATTGGGTTGTAGGAGGACCGACCAATAATGGCGGGATCA 916
BSNT_06143___ 905 TCCTTCGCTGGATCAGAGACGAGTTTGCCTCCTCCGAAATCGAAACAGCG 954
|.||..|.|||.|.|..||.||.||.|..||.||.||..|.||...|||.
BPUM_3602___g 917 TGCTGAGGTGGTTGAAGGATGAATTCGGGTCGTCAGAGGTGGAGGTAGCA 966
BSNT_06143___ 955 ACACGGCTGGGCATTGATCCATATGACGTGCTGACGAAAATTGCCCAACG 1004
|..||.||.||..|.||.||.|||||..||.|||.|.|.||.||..||..
BPUM_3602___g 967 AAGCGTCTAGGGGTGGACCCTTATGATCTGATGATGGATATCGCGGAAAA 1016
BSNT_06143___ 1005 CGTCAGACCCGGTTCTGACGGTCTGCTGTTCCACCCATATCTCGCCGGAG 1054
.|||..|.|.||||||||.|||.|||||||.|..||||.|.|..|.||.|
BPUM_3602___g 1017 GGTCCCAGCTGGTTCTGAGGGTTTGCTGTTTCTACCATTTTTATCAGGTG 1066
BSNT_06143___ 1055 AACGCGCTCCGTTGTGGAATCCGGATGTACGCGGCTCATTTT------TC 1098
|.||.||.||.|..||||||||..|||...|.|||.|.|||| ||
BPUM_3602___g 1067 AGCGTGCACCTTATTGGAATCCAAATGCGAGAGGCACCTTTTTTGGAATC 1116
BSNT_06143___ 1099 GGCCTGACCATGTC-GCATAAGAAAGAGCATATGATACGCGCGGCATTGG 1147
||||| || |||||||...||||||.|.||..|.||||..||.|
BPUM_3602___g 1117 GGCCT-------TCAGCATAAGCGGGAGCATTTTATTAGAGCGGTGTTAG 1159
BSNT_06143___ 1148 AAGGCGTCATTTACAACCTGTAC----ACGGTGTTCTTGGCGTTAACTGA 1193
|||||||||||...|.|.|.|.| .||||||| ||.||||..||
BPUM_3602___g 1160 AAGGCGTCATTATGAGCGTTTTCTCGATCGGTGTT----GCCTTAAGAGA 1205
BSNT_06143___ 1194 ATGCATGGATGGCCCGGTAACCCGCA-------TCCAAGCAACAGGGGGA 1236
.|..| ||||| .|.||| ||..|||..|.||.|||
BPUM_3602___g 1206 TTTAA--------CCGGT--TCAGCAAAGGATGTCAGAGCTTCGGGCGGA 1245
BSNT_06143___ 1237 TTTGCAAGGTCGGAGGTTTGGCGCCAAATGATGTCGGATATCTTCGAAT- 1285
||||||.|.||...|.|.|||||.|||||..|..|||||| || ||
BPUM_3602___g 1246 TTTGCACGATCTCCGCTATGGCGGCAAATTTTAGCGGATA----CG-ATG 1290
BSNT_06143___ 1286 ----CAGAGGTTGTCGTTCCGGAAAGCTACGAA-----AGCTCATGTCTC 1326
.|||.||..|.|||||.|||||.|||||| |||.|.|| .
BPUM_3602___g 1291 GGTAGAGAAGTGCTAGTTCCAGAAAGTTACGAAGCGTCAGCACTTG---G 1337
BSNT_06143___ 1327 GGCGCCTG-------------CATTTTAGGCCTGTATGCAACAG------ 1357
||||.||| .|.||||||.| .||||.||.||
BPUM_3602___g 1338 GGCGGCTGTCCTTGCACTTTATAGTTTAGGTC-ATATGGAAGAGATAGAA 1386
BSNT_06143___ 1358 ------GAAAAATTGACTCTTTCGACGCCGTGTCCGACATGATCGGCAGC 1401
.||.|.|.|| |||||..|..||..||.|||||
BPUM_3602___g 1387 GAGGTTCAAGAGTGGA----TTCGAATCTCTGCTCGTCATGA-------- 1424
BSNT_06143___ 1402 ACATACAGACATACGCCGATCGAAGACTCAGCCAAGGAA---TACAGAAC 1448
||.|| ||| .||||| .|||.||| ||||
BPUM_3602___g 1425 ACCTA-----ATA-------TGAAGA-----ACAATGAAACTTACA---- 1453
BSNT_06143___ 1449 ATTAATGCCGATTTTCATCAATCTATCAAGATTATTAGAAAATCAATATA 1498
||..||.|.||| ||.|| |||.||....|| ||
BPUM_3602___g 1454 --TAGAGCTGTTTT------ATTTA-------TATGAGCGCCTC----TA 1484
BSNT_06143___ 1499 C-ACAAATTGCAG-----ATT-------ATCAGAGGG--GC--TTAATCA 1531
| |||||.||.|| ||| ||.||.|.| || ||| |
BPUM_3602___g 1485 CGACAAACTGAAGGATGAATTTGATGTCATTAGCGCGCTGCAATTA---A 1531
BSNT_06143___ 1532 CACACAAATAG---- 1542
.||| ||||.|
BPUM_3602___g 1532 AACA-AAATCGTTAA 1545
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