Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06065 and BPUM_3595
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_06065___yxeH.1.24716.seq
# -bsequence dna-align/BPUM_3595___yxeH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06065___yxeH-BPUM_3595___yxeH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06065___yxeH-BPUM_3595___yxeH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06065___yxeH
# 2: BPUM_3595___yxeH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 862
# Identity: 575/862 (66.7%)
# Similarity: 575/862 (66.7%)
# Gaps: 98/862 (11.4%)
# Score: 1851.5
#
#
#=======================================
BSNT_06065___ 1 ATGTACAAACTAATTGCAATTGATATGGATGGAACACTTTTAAATGATCA 50
|||||.|||.||.|||||||||||||||||||.||..|.|||||||||||
BPUM_3595___y 1 ATGTATAAATTAGTTGCAATTGATATGGATGGTACGTTATTAAATGATCA 50
BSNT_06065___ 51 TCATGAAGTAACAGAGGAGGTCCGCGACGCCCTTCACGCGGCAAAAGCGG 100
.|||...||..|.||.|||||....||.|||.||||...|||.|||||.|
BPUM_3595___y 51 ACATATGGTGCCGGATGAGGTGTTTGAAGCCATTCAACAGGCGAAAGCAG 100
BSNT_06065___ 101 AAGGTGTCAAAATTGTGCTTTGCACCGGCCGGCCTATCGGGGGTGTGCAG 150
|.||.||.|||||.||..|.||.||.||.|||||.||.||.||.|||||.
BPUM_3595___y 101 AGGGAGTTAAAATCGTATTATGTACAGGACGGCCGATTGGCGGAGTGCAT 150
BSNT_06065___ 151 AGATATTTAGATGAACTGAATTTAATTGAAGAAGGCGACTATGTTATTGC 200
.|.|||||||||||.||..|..|.|.|.||||.||.||.|||||.|||||
BPUM_3595___y 151 CGCTATTTAGATGATCTTCAGCTCAATCAAGAGGGAGATTATGTGATTGC 200
BSNT_06065___ 201 GTATAATGGAGCGCTTGTTCAAAATACGCATACAAATGAAGTGGTCTCAG 250
.||.|||||.||||||||.|||||.|..||.||||||||||||||.||||
BPUM_3595___y 201 CTACAATGGGGCGCTTGTCCAAAACAGTCACACAAATGAAGTGGTGTCAG 250
BSNT_06065___ 251 AGCTGTC--TCTCGGTTATGATGATTTGACTTCATTATATGACCTGAGCT 298
|.|||.| |.|| .|||||.|||||.|||||.||||||.|.||||||.
BPUM_3595___y 251 AACTGACATTATC--CTATGAGGATTTAACTTCTTTATATAAGCTGAGCC 298
BSNT_06065___ 299 TAGAGCTGAAGACGCCGATGCATTTCTTTGACTCATCTAATTTGTATACG 348
..|||||..|.||.||||||||||..||.||.|||.||.|||||||.||.
BPUM_3595___y 299 GTGAGCTCGATACACCGATGCATTATTTCGATTCAGCTCATTTGTACACA 348
BSNT_06065___ 349 CCTAACCGGGACATTAGCGAATTTACCGTATACGAATCCTATGTGACACA 398
||.|||||.||.|||||.||.|..||.|||...|||||||||.|.|||.|
BPUM_3595___y 349 CCGAACCGAGATATTAGTGAGTACACAGTACTTGAATCCTATTTAACAAA 398
BSNT_06065___ 399 GGTGCCGCTTCATTTCCGCAAA-ATTGACGAGGTGCCAAAAG--ATATCC 445
|.|||||||| ||| |||.||..|.|| ||.|| |.||||
BPUM_3595___y 399 GCTGCCGCTT---------AAATATTTACCTGTTG--AAGAGGCAGATCC 437
BSNT_06065___ 446 -TCA-------TCCCGAAAGTGATGTTTATTGATAAACCGGAGAAC--TT 485
||| |.|||||..||||||.|||||||.|.|| ||||| ||
BPUM_3595___y 438 TTCAATGAGATTACCGAAGATGATGTATATTGATCAGCC--AGAACGGTT 485
BSNT_06065___ 486 ----AAGCCG-----CGTCATTACATCGATTCCGAAAGACGTGAGAGAAA 526
|||.|| .|.||||.|||| .||.||||.|||||
BPUM_3595___y 486 GGAAAAGACGATACAAGCCATTCCATC---------TGAAGTGAAAGAAA 526
BSNT_06065___ 527 AATATACAATGGTCAGAAGCGCGCCTTTCTTTTATGAAATTCTGCACTCG 576
|.||||..|||||.|.||||.|...||||||...||||||.|||||..|.
BPUM_3595___y 527 AGTATATGATGGTGAAAAGCACAGATTTCTTCCTTGAAATCCTGCATCCT 576
BSNT_06065___ 577 GAAGCCAGCAAAGGAAATGCTGT-ACGC-----------CAGCTGGCTCA 614
||||.|||||||||.|||||.|| |.|| .||||||
BPUM_3595___y 577 GAAGTCAGCAAAGGGAATGCCGTGAAGCTTCTAGCGAAAGAGCTGG---- 622
BSNT_06065___ 615 GCTCCTTGGAAT-----TGAACAGACGGAAGTCATGTGCATAGGCGACAA 659
|||.| |||| ||.||||||..|||.||.|||||
BPUM_3595___y 623 -------GGATTGCTCGTGAA------GAGGTCATGGCCATTGGTGACAA 659
BSNT_06065___ 660 CGGGAACGACCTGACAATGATCGAATGGGCGGGCTGCGGGGTTGCCATGG 709
.||.||||||.|..|.|||.|.||||..||.||||||||.||||||||||
BPUM_3595___y 660 TGGAAACGACGTATCGATGCTTGAATTTGCAGGCTGCGGCGTTGCCATGG 709
BSNT_06065___ 710 CAAACGCCATCCCAGAAGT-ATTGGAAGC---AGCAAACTTT----CAAA 751
.|||.|||||....||.|| | |||| ||||.|..|| ||||
BPUM_3595___y 710 GAAATGCCATTGATGATGTCA----AAGCAGTAGCAGATGTTGTGACAAA 755
BSNT_06065___ 752 CACGCTCCAATAATGAACATGGTGTTGCGCATGCGATTCACGAGCTTGTT 801
.||||||||||||...||.|||||.|||....|.||.||..|.|||
BPUM_3595___y 756 ----ATCCAATAATGAAGCCGGAGTTGCCCATATCCTGCATGAATTAGTT 801
BSNT_06065___ 802 TTGGCTAAATAA 813
||.|..||||||
BPUM_3595___y 802 TTAGGAAAATAA 813
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