Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06043 and BPUM_3585

See Amino acid alignment / Visit BSNT_06043 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:35
# Commandline: needle
#    -asequence dna-align/BSNT_06043___pdp.1.24716.seq
#    -bsequence dna-align/BPUM_3585___pdp.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06043___pdp-BPUM_3585___pdp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06043___pdp-BPUM_3585___pdp.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06043___pdp
# 2: BPUM_3585___pdp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity:     990/1305 (75.9%)
# Similarity:   990/1305 (75.9%)
# Gaps:           6/1305 ( 0.5%)
# Score: 3654.0
# 
#
#=======================================

BSNT_06043___      1 ATGAGAATGGTAGATATCATCATCAAAAAACAAAACGGAAAAGAACTCAC     50
                     ||||||||||||||||||||....|||||||...|||||||||||.|..|
BPUM_3585___p      1 ATGAGAATGGTAGATATCATTGCGAAAAAACGTGACGGAAAAGAATTATC     50

BSNT_06043___     51 CACTGAAGAAATTCAATTTTTCGTGAACGGCTACACAGACGGAAGCATTC    100
                     ..|.||.||||||...||.||.||.||.||.||.||.|||||||..||||
BPUM_3585___p     51 TTCAGAGGAAATTTCTTTCTTTGTCAAAGGATATACGGACGGAACAATTC    100

BSNT_06043___    101 CTGATTATCAGGCAAGCGCGCTT-GCTATGGCGATTTTCTTCCAGGATAT    149
                     ||||.||.||.|||||.|| ||| ||||||||||||||||||||.|||||
BPUM_3585___p    101 CTGACTACCAAGCAAGTGC-CTTGGCTATGGCGATTTTCTTCCAAGATAT    149

BSNT_06043___    150 GAGTGACCGTGAACGCGCGGACTTGACGATGGCTATGGTGAACTCCGGTG    199
                     ||..||.|..|||||.||.|||||.||..|.|||||||.||||||.||.|
BPUM_3585___p    150 GACGGATCAAGAACGTGCAGACTTAACACTCGCTATGGCGAACTCAGGAG    199

BSNT_06043___    200 AAACGATTGATCTTTCTGCCATTGAAGGAATTAAAGTGGATAAACACTCC    249
                     |.||||||||.||.|||||.||||||||.||||||||.||.||.||.||.
BPUM_3585___p    200 ACACGATTGACCTGTCTGCTATTGAAGGCATTAAAGTAGACAAGCATTCA    249

BSNT_06043___    250 ACCGGCGGCGTCGGCGACACGACAACGCTCGTTCTCGCCCCGCTTGTTGC    299
                     ||.|||||.||.||.||.||.||||||||.||.||.||.||.|||||.||
BPUM_3585___p    250 ACAGGCGGTGTAGGTGATACAACAACGCTTGTACTTGCACCTCTTGTGGC    299

BSNT_06043___    300 GGCTCTTGATGTGCCGGTTGCCAAAATGTCCGGCCGCGGCCTCGGCCATA    349
                     .||.||||||||.||.||.||.||||||||.|||||||||||.||.||||
BPUM_3585___p    300 TGCACTTGATGTACCTGTAGCGAAAATGTCTGGCCGCGGCCTTGGACATA    349

BSNT_06043___    350 CGGGCGGCACGATTGATAAGTTAGAGGCAATCGACGGCTTCCACGTGGAA    399
                     |.|||||.||..|.||||||.|.||.||..|..|.|||||||||||.|||
BPUM_3585___p    350 CAGGCGGAACAGTGGATAAGCTTGAAGCGGTAAAAGGCTTCCACGTAGAA    399

BSNT_06043___    400 CTGACGAAGGATGAATTTATTAAACTTGTGAACCGCGACAAGGTTGCGGT    449
                     .|.||.||.||.|||||.||..|.|||||||||||..|.||.||.|||||
BPUM_3585___p    400 ATCACAAAAGACGAATTCATCGAGCTTGTGAACCGTCATAAAGTAGCGGT    449

BSNT_06043___    450 CATCGGCCAAAGCGGCAATTTAACGCCGGCTGATAAAAAACTGTACGCGC    499
                     .||.||.|||...|||||..|.||.||.||.||||||||.||.||.||.|
BPUM_3585___p    450 TATTGGTCAATCAGGCAACCTGACACCAGCGGATAAAAAGCTTTATGCCC    499

BSNT_06043___    500 TTCGTGATGTAACGGGAACGGTCAATTCCATTCCGCTCATTGCAAGCTCG    549
                     ||||||||||.||.||.||.||.||.||.||||||||||||||.|||||.
BPUM_3585___p    500 TTCGTGATGTGACAGGTACCGTGAACTCAATTCCGCTCATTGCTAGCTCA    549

BSNT_06043___    550 ATTATGAGCAAAAAAATCGCTGCCGGGGCGGACGCCATCGTGCTTGACGT    599
                     ||||||||.||.|||||.|||||.||.||.||.||.|||||..|.||.||
BPUM_3585___p    550 ATTATGAGTAAGAAAATTGCTGCTGGCGCAGATGCGATCGTATTAGATGT    599

BSNT_06043___    600 AAAAACGGGAGCGGGCGCCTTCATGAAAACAGAAGAAGACGCAGCTGAAC    649
                     .|||||.||.||.||.||.||||||||||||...||||||.|.|...|||
BPUM_3585___p    600 GAAAACAGGTGCAGGTGCTTTCATGAAAACACCTGAAGACTCTGAGAAAC    649

BSNT_06043___    650 TTGCCAAAGCGATGGTACGCATCGGAAATAACGTCGGCCGTCAAACAATG    699
                     ||||.|||||.|||||.||.||.|||||.|||||.|||.|.|||||.|||
BPUM_3585___p    650 TTGCAAAAGCCATGGTCCGTATTGGAAACAACGTTGGCAGACAAACGATG    699

BSNT_06043___    700 GCTGTCATTTCAGACATGTCCCAGCCGCTCGGCTTTGCGATCGGAAATGC    749
                     ||||||||.||.||.|||||.||||||.|.||.||.|||||.||||||.|
BPUM_3585___p    700 GCTGTCATCTCTGATATGTCTCAGCCGTTAGGATTAGCGATTGGAAATTC    749

BSNT_06043___    750 GCTTGAAGTCAAAGAAGCGATCGACACACTCAAAGGCGAGGGACCTGAGG    799
                     .||||||||.||||||||.||.||||||||.||||||||.||.|||||.|
BPUM_3585___p    750 CCTTGAAGTGAAAGAAGCCATTGACACACTTAAAGGCGAAGGTCCTGAAG    799

BSNT_06043___    800 ATCTT-CATGAACTTGTCTTAACGCTCGGCAGCCAGATGGTTGTGCTTGC    848
                     | ||| .|.||.|||||..|.||..|.||.||.||.|||||.||.|||||
BPUM_3585___p    800 A-CTTAAACGAGCTTGTGCTCACATTAGGAAGTCAAATGGTCGTTCTTGC    848

BSNT_06043___    849 GAAAAAAGCCGATACATTGGACGAAGCGAGAGCGAAGCTGGAAGAAGTCA    898
                     |||||||||.||.||..|.||.|||||.||||..||||||...|||||||
BPUM_3585___p    849 GAAAAAAGCAGAAACGCTTGATGAAGCAAGAGAAAAGCTGATTGAAGTCA    898

BSNT_06043___    899 TGAAAAACGGCAAGGCACTTGAGAAATTCAAGGATTTCCTGAAAAACCAA    948
                     |||||||||||||.||.|||||||||||||||||.|||.|..||||||||
BPUM_3585___p    899 TGAAAAACGGCAAAGCCCTTGAGAAATTCAAGGAATTCTTAGAAAACCAA    948

BSNT_06043___    949 GGCGGCGACAGCTCGATTGTTGACGATCCGTCTAAGCTTCCGCAAGCCGC    998
                     |||||.|||.||||||||||.||..|.||....||.||.|||||||||.|
BPUM_3585___p    949 GGCGGAGACGGCTCGATTGTAGATCAACCAGAAAAACTGCCGCAAGCCCC    998

BSNT_06043___    999 ATATCAAATTGATGTGCCTGCCAAAGAAGCGGGTGTCGTCTCTGAAATCG   1048
                     .||.|||||.||.||.|||||.||||||||.|||||.||..||||.||||
BPUM_3585___p    999 TTACCAAATCGAAGTTCCTGCAAAAGAAGCAGGTGTGGTTGCTGAGATCG   1048

BSNT_06043___   1049 TTGCGGATGAAATCGGTGTCGCGGCGATGCTGTTAGGTGCCGGCCGCGCC   1098
                     |.||.||.|||||||||||.||.||.|||.|..|.||.||.||.||.||.
BPUM_3585___p   1049 TCGCAGACGAAATCGGTGTTGCAGCCATGATTCTTGGAGCAGGACGTGCA   1098

BSNT_06043___   1099 ACAAAAGAAGATGAGATCGATTTAGCCGTCGGCATCATGCTCCGCAAAAA   1148
                     ||||||||.||.||.|||||..||.|.||.||.||||||||...||||||
BPUM_3585___p   1099 ACAAAAGAGGACGATATCGACCTATCAGTTGGTATCATGCTGAACAAAAA   1148

BSNT_06043___   1149 GGTCGGCGACAAAGTAGAAAAAGGCGAACCGCTCGTGACGCTTTACGCCA   1198
                     .||.|||||....||.||||||||.||..|.|||||.||.|||.|.||.|
BPUM_3585___p   1149 AGTTGGCGATCGTGTTGAAAAAGGAGATTCACTCGTAACACTTCATGCAA   1198

BSNT_06043___   1199 ACCGCGAAAACGTTGATGAA-GTCATCGCAAAAGTCTATGACAACATCCG   1247
                     |.||.|||.|.|||| .||| |||||.|..|||.|.|||||||||||.||
BPUM_3585___p   1199 ATCGAGAAGATGTTG-CGAATGTCATGGAGAAAATTTATGACAACATTCG   1247

BSNT_06043___   1248 CATCGCCGCGGAAGCGAAGGCGCCGAAGCTGATTCATACGTTAATTACAG   1297
                     ||||||.|...|.|||.|.||.||.|..||.|||||.|||.|.||.||||
BPUM_3585___p   1248 CATCGCAGATCATGCGGATGCACCAACTCTCATTCACACGGTGATCACAG   1297

BSNT_06043___   1298 AATAA   1302
                     |||||
BPUM_3585___p   1298 AATAA   1302


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