Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06043 and BPUM_3585
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_06043___pdp.1.24716.seq
# -bsequence dna-align/BPUM_3585___pdp.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06043___pdp-BPUM_3585___pdp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06043___pdp-BPUM_3585___pdp.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06043___pdp
# 2: BPUM_3585___pdp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1305
# Identity: 990/1305 (75.9%)
# Similarity: 990/1305 (75.9%)
# Gaps: 6/1305 ( 0.5%)
# Score: 3654.0
#
#
#=======================================
BSNT_06043___ 1 ATGAGAATGGTAGATATCATCATCAAAAAACAAAACGGAAAAGAACTCAC 50
||||||||||||||||||||....|||||||...|||||||||||.|..|
BPUM_3585___p 1 ATGAGAATGGTAGATATCATTGCGAAAAAACGTGACGGAAAAGAATTATC 50
BSNT_06043___ 51 CACTGAAGAAATTCAATTTTTCGTGAACGGCTACACAGACGGAAGCATTC 100
..|.||.||||||...||.||.||.||.||.||.||.|||||||..||||
BPUM_3585___p 51 TTCAGAGGAAATTTCTTTCTTTGTCAAAGGATATACGGACGGAACAATTC 100
BSNT_06043___ 101 CTGATTATCAGGCAAGCGCGCTT-GCTATGGCGATTTTCTTCCAGGATAT 149
||||.||.||.|||||.|| ||| ||||||||||||||||||||.|||||
BPUM_3585___p 101 CTGACTACCAAGCAAGTGC-CTTGGCTATGGCGATTTTCTTCCAAGATAT 149
BSNT_06043___ 150 GAGTGACCGTGAACGCGCGGACTTGACGATGGCTATGGTGAACTCCGGTG 199
||..||.|..|||||.||.|||||.||..|.|||||||.||||||.||.|
BPUM_3585___p 150 GACGGATCAAGAACGTGCAGACTTAACACTCGCTATGGCGAACTCAGGAG 199
BSNT_06043___ 200 AAACGATTGATCTTTCTGCCATTGAAGGAATTAAAGTGGATAAACACTCC 249
|.||||||||.||.|||||.||||||||.||||||||.||.||.||.||.
BPUM_3585___p 200 ACACGATTGACCTGTCTGCTATTGAAGGCATTAAAGTAGACAAGCATTCA 249
BSNT_06043___ 250 ACCGGCGGCGTCGGCGACACGACAACGCTCGTTCTCGCCCCGCTTGTTGC 299
||.|||||.||.||.||.||.||||||||.||.||.||.||.|||||.||
BPUM_3585___p 250 ACAGGCGGTGTAGGTGATACAACAACGCTTGTACTTGCACCTCTTGTGGC 299
BSNT_06043___ 300 GGCTCTTGATGTGCCGGTTGCCAAAATGTCCGGCCGCGGCCTCGGCCATA 349
.||.||||||||.||.||.||.||||||||.|||||||||||.||.||||
BPUM_3585___p 300 TGCACTTGATGTACCTGTAGCGAAAATGTCTGGCCGCGGCCTTGGACATA 349
BSNT_06043___ 350 CGGGCGGCACGATTGATAAGTTAGAGGCAATCGACGGCTTCCACGTGGAA 399
|.|||||.||..|.||||||.|.||.||..|..|.|||||||||||.|||
BPUM_3585___p 350 CAGGCGGAACAGTGGATAAGCTTGAAGCGGTAAAAGGCTTCCACGTAGAA 399
BSNT_06043___ 400 CTGACGAAGGATGAATTTATTAAACTTGTGAACCGCGACAAGGTTGCGGT 449
.|.||.||.||.|||||.||..|.|||||||||||..|.||.||.|||||
BPUM_3585___p 400 ATCACAAAAGACGAATTCATCGAGCTTGTGAACCGTCATAAAGTAGCGGT 449
BSNT_06043___ 450 CATCGGCCAAAGCGGCAATTTAACGCCGGCTGATAAAAAACTGTACGCGC 499
.||.||.|||...|||||..|.||.||.||.||||||||.||.||.||.|
BPUM_3585___p 450 TATTGGTCAATCAGGCAACCTGACACCAGCGGATAAAAAGCTTTATGCCC 499
BSNT_06043___ 500 TTCGTGATGTAACGGGAACGGTCAATTCCATTCCGCTCATTGCAAGCTCG 549
||||||||||.||.||.||.||.||.||.||||||||||||||.|||||.
BPUM_3585___p 500 TTCGTGATGTGACAGGTACCGTGAACTCAATTCCGCTCATTGCTAGCTCA 549
BSNT_06043___ 550 ATTATGAGCAAAAAAATCGCTGCCGGGGCGGACGCCATCGTGCTTGACGT 599
||||||||.||.|||||.|||||.||.||.||.||.|||||..|.||.||
BPUM_3585___p 550 ATTATGAGTAAGAAAATTGCTGCTGGCGCAGATGCGATCGTATTAGATGT 599
BSNT_06043___ 600 AAAAACGGGAGCGGGCGCCTTCATGAAAACAGAAGAAGACGCAGCTGAAC 649
.|||||.||.||.||.||.||||||||||||...||||||.|.|...|||
BPUM_3585___p 600 GAAAACAGGTGCAGGTGCTTTCATGAAAACACCTGAAGACTCTGAGAAAC 649
BSNT_06043___ 650 TTGCCAAAGCGATGGTACGCATCGGAAATAACGTCGGCCGTCAAACAATG 699
||||.|||||.|||||.||.||.|||||.|||||.|||.|.|||||.|||
BPUM_3585___p 650 TTGCAAAAGCCATGGTCCGTATTGGAAACAACGTTGGCAGACAAACGATG 699
BSNT_06043___ 700 GCTGTCATTTCAGACATGTCCCAGCCGCTCGGCTTTGCGATCGGAAATGC 749
||||||||.||.||.|||||.||||||.|.||.||.|||||.||||||.|
BPUM_3585___p 700 GCTGTCATCTCTGATATGTCTCAGCCGTTAGGATTAGCGATTGGAAATTC 749
BSNT_06043___ 750 GCTTGAAGTCAAAGAAGCGATCGACACACTCAAAGGCGAGGGACCTGAGG 799
.||||||||.||||||||.||.||||||||.||||||||.||.|||||.|
BPUM_3585___p 750 CCTTGAAGTGAAAGAAGCCATTGACACACTTAAAGGCGAAGGTCCTGAAG 799
BSNT_06043___ 800 ATCTT-CATGAACTTGTCTTAACGCTCGGCAGCCAGATGGTTGTGCTTGC 848
| ||| .|.||.|||||..|.||..|.||.||.||.|||||.||.|||||
BPUM_3585___p 800 A-CTTAAACGAGCTTGTGCTCACATTAGGAAGTCAAATGGTCGTTCTTGC 848
BSNT_06043___ 849 GAAAAAAGCCGATACATTGGACGAAGCGAGAGCGAAGCTGGAAGAAGTCA 898
|||||||||.||.||..|.||.|||||.||||..||||||...|||||||
BPUM_3585___p 849 GAAAAAAGCAGAAACGCTTGATGAAGCAAGAGAAAAGCTGATTGAAGTCA 898
BSNT_06043___ 899 TGAAAAACGGCAAGGCACTTGAGAAATTCAAGGATTTCCTGAAAAACCAA 948
|||||||||||||.||.|||||||||||||||||.|||.|..||||||||
BPUM_3585___p 899 TGAAAAACGGCAAAGCCCTTGAGAAATTCAAGGAATTCTTAGAAAACCAA 948
BSNT_06043___ 949 GGCGGCGACAGCTCGATTGTTGACGATCCGTCTAAGCTTCCGCAAGCCGC 998
|||||.|||.||||||||||.||..|.||....||.||.|||||||||.|
BPUM_3585___p 949 GGCGGAGACGGCTCGATTGTAGATCAACCAGAAAAACTGCCGCAAGCCCC 998
BSNT_06043___ 999 ATATCAAATTGATGTGCCTGCCAAAGAAGCGGGTGTCGTCTCTGAAATCG 1048
.||.|||||.||.||.|||||.||||||||.|||||.||..||||.||||
BPUM_3585___p 999 TTACCAAATCGAAGTTCCTGCAAAAGAAGCAGGTGTGGTTGCTGAGATCG 1048
BSNT_06043___ 1049 TTGCGGATGAAATCGGTGTCGCGGCGATGCTGTTAGGTGCCGGCCGCGCC 1098
|.||.||.|||||||||||.||.||.|||.|..|.||.||.||.||.||.
BPUM_3585___p 1049 TCGCAGACGAAATCGGTGTTGCAGCCATGATTCTTGGAGCAGGACGTGCA 1098
BSNT_06043___ 1099 ACAAAAGAAGATGAGATCGATTTAGCCGTCGGCATCATGCTCCGCAAAAA 1148
||||||||.||.||.|||||..||.|.||.||.||||||||...||||||
BPUM_3585___p 1099 ACAAAAGAGGACGATATCGACCTATCAGTTGGTATCATGCTGAACAAAAA 1148
BSNT_06043___ 1149 GGTCGGCGACAAAGTAGAAAAAGGCGAACCGCTCGTGACGCTTTACGCCA 1198
.||.|||||....||.||||||||.||..|.|||||.||.|||.|.||.|
BPUM_3585___p 1149 AGTTGGCGATCGTGTTGAAAAAGGAGATTCACTCGTAACACTTCATGCAA 1198
BSNT_06043___ 1199 ACCGCGAAAACGTTGATGAA-GTCATCGCAAAAGTCTATGACAACATCCG 1247
|.||.|||.|.|||| .||| |||||.|..|||.|.|||||||||||.||
BPUM_3585___p 1199 ATCGAGAAGATGTTG-CGAATGTCATGGAGAAAATTTATGACAACATTCG 1247
BSNT_06043___ 1248 CATCGCCGCGGAAGCGAAGGCGCCGAAGCTGATTCATACGTTAATTACAG 1297
||||||.|...|.|||.|.||.||.|..||.|||||.|||.|.||.||||
BPUM_3585___p 1248 CATCGCAGATCATGCGGATGCACCAACTCTCATTCACACGGTGATCACAG 1297
BSNT_06043___ 1298 AATAA 1302
|||||
BPUM_3585___p 1298 AATAA 1302
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