Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05962 and BPUM_3562
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_05962___yxjG.1.24716.seq
# -bsequence dna-align/BPUM_3562.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05962___yxjG-BPUM_3562.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05962___yxjG-BPUM_3562.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05962___yxjG
# 2: BPUM_3562
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1182
# Identity: 818/1182 (69.2%)
# Similarity: 818/1182 (69.2%)
# Gaps: 105/1182 ( 8.9%)
# Score: 2688.0
#
#
#=======================================
BSNT_05962___ 1 ATGTCACAACAAACAACACCCGCAGAACAAAAATCACTTCAAAGAAAA-- 48
|||.|||| ||.|| |||.||.|..||||||||
BPUM_3562 1 ATGACACA---------------AGTAC--AAACCATTGGAAAGAAAACA 33
BSNT_05962___ 49 ---AAACCGCCGTTTCGCGCGGATCAAGTCGGAAGCCT-----GTTGAGA 90
||||||||.||.|||||.||||||||.||.||..| |||.|||
BPUM_3562 34 ACGAAACCGCCATTCCGCGCAGATCAAGTAGGCAGTTTACTTCGTTCAGA 83
BSNT_05962___ 91 TCTGAGCCCGTTAAAAAAGCGCGGCTGCAAAAAGCGGCCGGCGATA---T 137
.|..| |.||..||||.||...|||||| |||.|.||.|| |
BPUM_3562 84 ACGTA-----TCAAGGAAGCACGCAAGCAAAA---GGCAGACGGTACACT 125
BSNT_05962___ 138 TACGGCTGAGCAGCTTCGCCAGATCGAAAACGATGAAATTATCCGCATTG 187
.||.||.|||||.||.||.||.||.||||||||.|||||.|..||.||||
BPUM_3562 126 GACAGCAGAGCAACTCCGACAAATTGAAAACGAAGAAATCACTCGTATTG 175
BSNT_05962___ 188 TGGAAAAACAGAAGGAAACCGGCCTGAACGTCGTGACAGACGGTGAATTC 237
||||.|||||.|||||||..||..|..|.||.||.|||||.||.||.|||
BPUM_3562 176 TGGAGAAACAAAAGGAAATTGGATTAGAGGTTGTCACAGATGGAGAGTTC 225
BSNT_05962___ 238 CGCAGAGCATGGTGGCACTTTGATTTCCT----GGAAAACTTAGATGGCG 283
.|..|.||.||||||||.|||||.||.|| ||| .|.|||||.|
BPUM_3562 226 AGACGTGCTTGGTGGCATTTTGACTTTCTTGAGGGA----CTCGATGGAG 271
BSNT_05962___ 284 TTGAGCCGTTTACTCCTGAGCAAGGCATTCAATTCCATAACGTAC--AGA 331
||||....|||....|.||.|||||.|||||||||||.|| ||| .||
BPUM_3562 272 TTGAAGGATTTGAAGCAGATCAAGGTATTCAATTCCACAA--TACGACGA 319
BSNT_05962___ 332 CAAAAGCACGCGGCATTAAAGTCACAGGTGATATCGACTTTTCAACTCAC 381
||||.||.||.||.||.|||||.||.||..|.|||||.|||.||..|||.
BPUM_3562 320 CAAAGGCGCGAGGAATCAAAGTAACGGGCAAGATCGATTTTACAGATCAT 369
BSNT_05962___ 382 CCAATGCTTGAAGATTACTC-ATTTCTCCATAGCATTGCCGGTG-----A 425
||||||||.|||||||| || |||.||.||.|||||.||.|||| |
BPUM_3562 370 CCAATGCTGGAAGATTA-TCGATTCCTTCACAGCATCGCTGGTGATCATA 418
BSNT_05962___ 426 CGCGACGCCAAAGATGACGATTCCAAGCCCGAATATGCTGTTTTTCCGCG 475
| |||.||| ||||||||||||||.||.||||||||.||||||||.|
BPUM_3562 419 C----CGCTAAA-ATGACGATTCCAAGTCCAAATATGCTCTTTTTCCGTG 463
BSNT_05962___ 476 GAAAATTGGAAAAAGGTGCATACAAAAACGACTA---TCACCTTTTCCAG 522
||||..|.|||.||||.|.||||.|.| |.||| .|| |||||.
BPUM_3562 464 GAAAGCTTGAAGAAGGAGTATACGACA--GCCTAGAGGCA----TTCCAC 507
BSNT_05962___ 523 CATGATGTATCCAAAGCATATAAAAAAGCGATTCAAGCGTTTTATGACAG 572
||||||||..|..|.||||||||.|||||.||.|..||.||||||||...
BPUM_3562 508 CATGATGTGGCACAGGCATATAAGAAAGCCATCCGTGCCTTTTATGATGC 557
BSNT_05962___ 573 AGGCTGCCGCTACCTCCAGCTTGATGATACAGCGTGGGCCGTTTTCTTAT 622
|||||||||.||.||.|||||.|||||||||||.||||||||.|||||.|
BPUM_3562 558 AGGCTGCCGTTATCTACAGCTGGATGATACAGCATGGGCCGTGTTCTTTT 607
BSNT_05962___ 623 CTGAAAAA-GGCTTAAAACAAATCGAAGCGTTCG-----GAACAACGCCT 666
|||||||| |||.| .||||||||.||||.||.| |||.||
BPUM_3562 608 CTGAAAAAGGGCAT-GAACAAATCAAAGCCTTTGGCCGAGAAGAA----- 651
BSNT_05962___ 667 GACGAGCTTCGTCAGCTGTTTGCGAAATCCATTAATGACGCGATTGCAGA 716
||.||.||.|||.||...|||||||||.|.||.|||||.||..||||.||
BPUM_3562 652 GATGAACTGCGTGAGTCATTTGCGAAAACAATCAATGAAGCAGTTGCCGA 701
BSNT_05962___ 717 CCGTCCTGATGACTTGACCGTAACCATGCATATTTGCCGCGGCAACTTCC 766
.|||||.||.||||||....|.||.|||||.||||||||.||.|||||..
BPUM_3562 702 TCGTCCAGAGGACTTGGTGATCACTATGCACATTTGCCGTGGGAACTTTA 751
BSNT_05962___ 767 AGTCCACTTGGACAGCGGAAGGCGGCTATGACGCAGCAGCCGAAACCATT 816
|.||.||.|||.||||.||||||||.|||||.|||||.||.|||||.|||
BPUM_3562 752 AATCGACATGGGCAGCTGAAGGCGGTTATGAAGCAGCGGCAGAAACGATT 801
BSNT_05962___ 817 TTTGACGGCTTGAATCTTGACGGCCTTTTCTTAGAGT---ATGATGATTC 863
||||.||||||..||.|.||.||.||.||.|||||.| |.||.|||
BPUM_3562 802 TTTGCCGGCTTAGATGTAGATGGTCTCTTTTTAGAATTCGACGACGAT-- 849
BSNT_05962___ 864 ACGCTCAGGCGGATTTGAGCCGCTCCGTTACGT--AAAACGGCCTGATCT 911
||.||.|||||.|||||.||.||.||.||.|| |.||| ||..|.||
BPUM_3562 850 -CGTTCTGGCGGTTTTGAACCCCTTCGCTATGTGAAGAAC--CCAAACCT 896
BSNT_05962___ 912 TCAGCTTGTTCTTGGCTTAGTGACATCTAAATTCGGTGAGCTTGAACATC 961
.||..|.||.||.|||.|.||.||.||.||||.||||||||||| |.|
BPUM_3562 897 CCAAATCGTACTAGGCCTTGTCACTTCAAAATACGGTGAGCTTG---AGC 943
BSNT_05962___ 962 CGG----AC-GATGTAAAACGCCGTATCGAAGAAGCATCCCGTTATGT-A 1005
||| || |||..|||| ..|.|||||.||||||.|.|..||.|| .
BPUM_3562 944 CGGCTGAACAGATTCAAAA--AAGAATCGAGGAAGCAGCTCAATACGTCG 991
BSNT_05962___ 1006 AGCTTAGACCAGCTTTGCCTCAGCCCTCAATGCGGATTCGCTTCAACTGA 1055
|..||| |||||.|||||.|.||.||.||.|||||.|||||.|||||.||
BPUM_3562 992 ACATTA-ACCAGATTTGCTTGAGTCCACAGTGCGGTTTCGCCTCAACGGA 1040
BSNT_05962___ 1056 GGAAGGCAACAAGCTGACTGAAGAACAGCAATGGGCGAAGCTCCGCCATG 1105
|||||||||...|.|.||.|||||.||.|||||||..|||||.||.||||
BPUM_3562 1041 GGAAGGCAATCTGTTAACAGAAGAGCAACAATGGGAAAAGCTTCGTCATG 1090
BSNT_05962___ 1106 TGGTTGAGATCGCTAATGATGTTTGGAAATAA 1137
||.|||||||.||..||.|.||.|||||||||
BPUM_3562 1091 TGATTGAGATTGCGGATCAAGTGTGGAAATAA 1122
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