Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01356 and BPUM_3551
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:57
# Commandline: needle
# -asequence dna-align/BSNT_01356___yfjD.1.24716.seq
# -bsequence dna-align/BPUM_3551___yfjD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01356___yfjD-BPUM_3551___yfjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01356___yfjD-BPUM_3551___yfjD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01356___yfjD
# 2: BPUM_3551___yfjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 641
# Identity: 325/641 (50.7%)
# Similarity: 325/641 (50.7%)
# Gaps: 196/641 (30.6%)
# Score: 694.0
#
#
#=======================================
BSNT_01356___ 1 TTGAAAAACCAA--GAAATCATTGAAGTCAAAAGCAAAATGTTCCTGAGA 48
||| ||.|||| |||...||.|||||.|.|||||..|..||..|.||.
BPUM_3551___y 1 TTG--AATCCAAGTGAAGGAATAGAAGTGAGAAGCAGGACCTTTTTAAGG 48
BSNT_01356___ 49 ATATGGGCTTTTGTCGGATCTGCCGGTATGGGATTAGCAT--GTTTGTGG 96
.|||||||||||.|.|.|.|.|.|||..|.|| ||.||| ||.|.|||
BPUM_3551___y 49 GTATGGGCTTTTTTAGCAACAGGCGGCTTCGG--TATCATCGGTATTTGG 96
BSNT_01356___ 97 CTCTTTT-ATATGGGTATTACGTTTCAAACGAAATATTACCTATTAGCCA 145
.|.|||| |.| .|.|.|.||.|||.||.||||.|||
BPUM_3551___y 97 TTGTTTTCAGA-AGCTCTAACATTTGAATCGAATTAT------------- 132
BSNT_01356___ 146 TTCCTGCTGGCTTTCTGTTCACCTTGTTT---TGTTTA-------TATT- 184
||.|||||| |.|||| ||||
BPUM_3551___y 133 --------------------ACATTGTTTTTATTTTTAGGCGGACTATTA 162
BSNT_01356___ 185 -------TATTT------ATCATCTTCTTT----------CCGGCTTTCA 211
|||.| ||| ||||.||| ||.|||||.|
BPUM_3551___y 163 GGCATGGTATATGGCTCGATC-TCTTTTTTGATGATTCTGCCAGCTTTTA 211
BSNT_01356___ 212 CCCCGCGGGGAAATACCATTTTCCGCATCAAGACAGGAAAAAATGGAGAA 261
|...|.||||||||...|||||.|||||..||...|||||||||||.|..
BPUM_3551___y 212 CGAAGAGGGGAAATGTGATTTTTCGCATTCAGCGCGGAAAAAATGGTGCT 261
BSNT_01356___ 262 GTGTTCACTGACAAAGTG-TCTGTTACGTTTACTGATATCAAGAAA---- 306
||| ||| ||..||| .|.| |||.||.|| |.||||||.|
BPUM_3551___y 262 GTG----CTG-CATCGTGAGCGG--ACGATTCCT--TTTCAAGACATTCA 302
BSNT_01356___ 307 ----ATTGAGATGAGCCGCCATAAATTTAGTCTAAAAGGAATTTTC---- 348
|||||.|||.|..|.|||...|..|||.|||.||||.||.||
BPUM_3551___y 303 ATCCATTGATATGCGTAGGCATCGGTACAGTGTAAGAGGATTTCTCTTCA 352
BSNT_01356___ 349 ----------CA---AGAAGATATATTGATCCAAACCGTTGATCAGAAGA 385
|| .|||.|||.||.| .||| |||||||.|
BPUM_3551___y 353 TGGATGTGCTCATTCGGAAAATAGATGG---GAAA---TTGATCAAA--- 393
BSNT_01356___ 386 CCATTCGCATTCCCACTTGGAACATCATTCCGAATCCGTTG-----TTTT 430
|||||..| |.|||..||| |..|.|| .|.|
BPUM_3551___y 394 --------ATTCCAGC---GTACAGTATT-----TTAGATGAAGAAGTAT 427
BSNT_01356___ 431 TCG---AAGCGGTTGAACGCTATATCCTTCCACATCTGAATGA-AGAGGC 476
||| ||.|.||..|||...|.|||..||||.||.|.|||.| |.||.|
BPUM_3551___y 428 TCGAGCAAACCGTCAAACAAGAGATCTATCCATATTTAAATCAGACAGCC 477
BSNT_01356___ 477 GAAAAGCAATTGGATCGGACAGTTTACAGACATCCAACG--CAGTGCGTA 524
.||.|| ||.|||| ||||| ||| ||| | |||
BPUM_3551___y 478 CAAGAG-AACTGGA---GACAG----CAG-CAT-----GGTCAG------ 507
BSNT_01356___ 525 TTTGAAG-------GAATTTGAGAATCATCCGAAGCTTTAG 558
.|||||| .|||| ||
BPUM_3551___y 508 GTTGAAGAACAGATCAATT----AA---------------- 528
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