Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05522 and BPUM_3544

See Amino acid alignment / Visit BSNT_05522 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:08
# Commandline: needle
#    -asequence dna-align/BSNT_05522___ywqI.1.24716.seq
#    -bsequence dna-align/BPUM_3544___ywqIA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05522___ywqI-BPUM_3544___ywqIA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05522___ywqI-BPUM_3544___ywqIA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05522___ywqI
# 2: BPUM_3544___ywqIA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 306
# Identity:     161/306 (52.6%)
# Similarity:   161/306 (52.6%)
# Gaps:          87/306 (28.4%)
# Score: 387.0
# 
#
#=======================================

BSNT_05522___      1 ATGTCAGAAATTAAGCTGAAGTACGACACAGTCATCAAAACATTGGATTC     50
                     |||..|.||||||||.|.||.|||.|.|||||.||.||            
BPUM_3544___y      1 ATGGGACAAATTAAGTTAAACTACCAAACAGTTATGAA------------     38

BSNT_05522___     51 TGTCAAAGATGCGCTTGCTGACGT------ATCAATCGGCGC-----CGC     89
                       ||||       ||.|..||.||      |.||.|||..||     || 
BPUM_3544___y     39 --TCAA-------CTAGACGAAGTCTCCCAAGCAGTCGAAGCTTTAACG-     78

BSNT_05522___     90 GGGGTCCAATGGAAAAAACA--AACTCGATTATAC----GAAAA------    127
                             |||.|||||.||  |    |||.|..|    |||||      
BPUM_3544___y     79 --------ATGAAAAAAGCAGCA----GATAAAGCAGGTGAAAACAGCCT    116

BSNT_05522___    128 --AAT-----ACCA-------------TGAGCGTGAGGAGAACATCAAAA    157
                       |||     ||||             ||||...||||.||||    .||
BPUM_3544___y    117 TGAATTTGTGACCAAGTGGACGGCACGTGAGGCAGAGGTGAAC----GAA    162

BSNT_05522___    158 CCATGCTCGGAGATTATAAAAAAGCGGTACAGAAAAATATCGAGGATACA    207
                       |||.||..|..||.||||.||||..||...||||||.|..||||||| 
BPUM_3544___y    163 --ATGGTCTCAAGTTTTAAAGAAGCTTTAACCAAAAATGTTCAGGATAC-    209

BSNT_05522___    208 AAGGAT--AATGTAGATTCACTCAAAGAGCAGGACGAGGCGATAGCGGTA    255
                      |.|.|  |||||..|..|..|.|||||.|||||.||.|||||.||||.|
BPUM_3544___y    210 -ACGCTCGAATGTGAAAACCTTAAAAGAACAGGATGAAGCGATTGCGGCA    258

BSNT_05522___    256 AAATAG    261
                     |||||.
BPUM_3544___y    259 AAATAA    264


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