Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05931 and BPUM_3518
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_05931___cydB.1.24716.seq
# -bsequence dna-align/BPUM_3518___cydB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05931___cydB-BPUM_3518___cydB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05931___cydB-BPUM_3518___cydB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05931___cydB
# 2: BPUM_3518___cydB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1092
# Identity: 713/1092 (65.3%)
# Similarity: 713/1092 (65.3%)
# Gaps: 150/1092 (13.7%)
# Score: 2127.5
#
#
#=======================================
BSNT_05931___ 1 ATGGCATCTCTTCATGATCTTTGGTTTATACTCGTTGCTGTATTGTTTGT 50
|||||||.||||.|.||..||||||||||.||.||.||.|||||||||||
BPUM_3518___c 1 ATGGCATATCTTAACGAGATTTGGTTTATTCTTGTCGCAGTATTGTTTGT 50
BSNT_05931___ 51 AGGATTCTTCTTTTTGGAGGGCTTTGATTTCGGGGTCGGCATGGCGACCC 100
.|||||.|||||.||.||.||.||||||||.||.||.||.|||.|.|..|
BPUM_3518___c 51 TGGATTTTTCTTCTTAGAAGGATTTGATTTTGGTGTTGGGATGTCCATGC 100
BSNT_05931___ 101 GTTTTCTTGGCCATAATGAAT----TAGAACGCAGAGTGCTGATCAACAC 146
...|.||||| ||.|.|| ..||||||.|..|..|.||.|||||
BPUM_3518___c 101 AGCTACTTGG----AAAGGATGCGCACGAACGCCGCATTTTAATTAACAC 146
BSNT_05931___ 147 GATCGGGCCGTTCTGGGACGCGAATGAAGTGTGGCTTTTGACTGGCGCAG 196
|||.||.||.||||||||.||||||||.||.|||||..|.||.|..|..|
BPUM_3518___c 147 GATTGGACCTTTCTGGGATGCGAATGAGGTCTGGCTGATTACAGCTGGGG 196
BSNT_05931___ 197 GCGCCATTTTCGCGGCATTCCCAAACTGGTATGCAACGATGCTGAGCGGT 246
||||.||||||||.||.|||||..||||||||||.||||||.|.||.||.
BPUM_3518___c 197 GCGCAATTTTCGCTGCTTTCCCGCACTGGTATGCCACGATGTTCAGTGGA 246
BSNT_05931___ 247 TATTACATTCCGTTTG----TCATAGTGCTGCTT-GCGTTAATGGGCCGC 291
||.||.||.||||||| || |.|| ||| |||.|.||.||.|||
BPUM_3518___c 247 TACTATATACCGTTTGCGGTTC----TCCT-CTTAGCGCTCATCGGGCGC 291
BSNT_05931___ 292 GGGGTCGCGTTTGAGTTCCGCGGCAAGGTGGATCATTTAAAA------TG 335
||.||.||.|||||.|||||.||.|||||||| .||| ||
BPUM_3518___c 292 GGAGTTGCCTTTGAATTCCGAGGGAAGGTGGA------GAAAGCCTCTTG 335
BSNT_05931___ 336 GGTAAAGGTTTGGGACTGGGTCGTTTTCTTCGGCAGTCTGATT-CCTCCG 384
|.|.||.|..||||||||||||.|.|||||.|||||||| ||| ||.|||
BPUM_3518___c 336 GATCAAAGCATGGGACTGGGTCATCTTCTTTGGCAGTCT-ATTGCCACCG 384
BSNT_05931___ 385 TTTGTGCTTGGTGTGCTGTTCACGA-CATTATTCCGCGGGATGCCGATTG 433
|||.|.||.||||||||.|||||.| .||| ||.|||||||||||.||.|
BPUM_3518___c 385 TTTTTACTCGGTGTGCTATTCACAAGTATT-TTACGCGGGATGCCAATCG 433
BSNT_05931___ 434 ATGCCGACATGAACATTCACGCACATG----TATCTGATTATATCAATGT 479
||...|||||||||||..|||| || || |.||||.|.|.||..|
BPUM_3518___c 434 ATCAAGACATGAACATGTACGC---TGGTTTTA-CGGATTTTGTGAACCT 479
BSNT_05931___ 480 ATATTCTATACTTGGCGGTGTGACGGTAACACTTCTTTGCTTCCAGCATG 529
.|||||..|..|||||||..|..|.|||||..||||||||.|.|.|||.|
BPUM_3518___c 480 TTATTCAGTGATTGGCGGATTAGCTGTAACGGTTCTTTGCCTTCTGCACG 529
BSNT_05931___ 530 GATTAATGTTTATCACGCTGCGTAC-GATTGGTGATTTGCAAAACCGCGC 578
||||.||.||..||||.||.||.|| || .||||||||...|.|.||.||
BPUM_3518___c 530 GATTGATTTTCGTCACACTTCGAACAGA-GGGTGATTTAAGAGATCGTGC 578
BSNT_05931___ 579 CCGGAAAA----TGGCGCAAAAGATAATGGGTGT--TG-TTTTTG---TA 618
||.|| |||| |.|.|||| || |..||| |.
BPUM_3518___c 579 ---GAGAAAGCTTGGC----------AAGCGTGTCCTGCTGATTGCACTG 615
BSNT_05931___ 619 GCGGTTCTTG-CCTTCGCGGCCCTTTCT--GCGTATC--------AGACA 657
.|.||.|||| ||| .|||.| |.||||| |.|||
BPUM_3518___c 616 CCTGTACTTGTCCT--------ATTTGTTGGTGTATCTATCATGGAAACA 657
BSNT_05931___ 658 GACATGTTTAC---ACGCCGCGGCGA-GATTACCATTCCGCTCGCTGTTT 703
|||||.|.||| ||||| ||| .||.|||||.|||.|..|||||.
BPUM_3518___c 658 GACATTTATACGGTACGCC----CGATCATCACCATCCCGTTAACTGTTC 703
BSNT_05931___ 704 TGATTGTCATCTGCTTTATGCTCGCGGCTGTATTTATTCGTAAGAAAAAA 753
|.|||||..|.|| |||.| |.|||||..||||..| ||.|||||||
BPUM_3518___c 704 TCATTGTGGTTTG--TTACG-TAGCGGCGCTATTCTT---TATGAAAAAA 747
BSNT_05931___ 754 ------GACGGCTGGACATT----TGGGATGACAGGCGCTGG---TCTGG 790
||.||||||||||| | |.|||||.||.|| |.|||
BPUM_3518___c 748 GAACGTGATGGCTGGACATTCCTAT----TCACAGGTGCGGGCATTATGG 793
BSNT_05931___ 791 CGCTGACCGTGGGAATGATCTTTATTTCCCTATTCCCTCGCGTAATGGTC 840
||||.|||...|||.|.||.|.|.|..|.|||||.|||||.|||.|.
BPUM_3518___c 794 ---TGACAGTGACGATGCTTTTCACTGCATTGTTCCCGCGCGTCATGATT 840
BSNT_05931___ 841 AGCTCGCT---TCATAGCGCAT--------ACGATTTAACAGTAGCTAAC 879
||.||..| .|||| ||| ||.|||.|| |||
BPUM_3518___c 841 AGTTCAATCAACCATA---CATTTGATCTGACCATTCAA--------AAC 879
BSNT_05931___ 880 GCTTCTTCCGGAGATTATTCGCTTAAAGTCATGTCAATTGCAG-CATTAA 928
|||.|.||.|||..||||||.||.|..||||||.|.||||..| ||||
BPUM_3518___c 880 GCTGCATCTGGATCTTATTCACTGACGGTCATGACGATTGTTGCCATT-- 927
BSNT_05931___ 929 CGCTAT--TGCCGTTCGT-CATCGGCAGCCAGATCTGGAGCTATTATGTC 975
.||.| ||||.||.|| |.|.||.| .||.||.|||||||||||.|||
BPUM_3518___c 928 -TCTTTGCTGCCCTTTGTGCTTGGGTA-TCAAATTTGGAGCTATTACGTC 975
BSNT_05931___ 976 TTCCGGAAGCGCGTCAGCCATAAGGAGCCTATGACTTATTAA 1017
|||||.||.||.||.|||..|||||||||.|||||.||.|||
BPUM_3518___c 976 TTCCGTAAACGTGTAAGCGGTAAGGAGCCAATGACCTACTAA 1017
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