Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05903 and BPUM_3505
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_05903___licC.1.24716.seq
# -bsequence dna-align/BPUM_3505___licC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05903___licC-BPUM_3505___licC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05903___licC-BPUM_3505___licC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05903___licC
# 2: BPUM_3505___licC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1384
# Identity: 995/1384 (71.9%)
# Similarity: 995/1384 (71.9%)
# Gaps: 59/1384 ( 4.3%)
# Score: 3397.5
#
#
#=======================================
BSNT_05903___ 1 GTGAATAAAGTCAATCAGATCT-TAGAAGAAAAGGTCATGCCTATAGC-G 48
.|||||..|.|||| |.|||.| |||||||.|||||||||||..|.|| |
BPUM_3505___l 1 ATGAATGGATTCAA-CCGATTTCTAGAAGAGAAGGTCATGCCGTTTGCAG 49
BSNT_05903___ 49 GGAAGAATTGCGGGACAGCGTCATTTGCAGGCGCTGCGTGATGGTATCAT 98
||||| |||||.|..||..|.|||||.||.||..|||||||.||.||..|
BPUM_3505___l 50 GGAAG-ATTGCCGCTCAAAGACATTTACAAGCATTGCGTGACGGAATTGT 98
BSNT_05903___ 99 CCTCACGATGCCCCTGATTATCATCGGTTC-CTTTTTCCTCATCATTGGC 147
..|.||.|||||.||.|||||..||||||| ||.||| |||||..|.|.|
BPUM_3505___l 99 TTTAACCATGCCTCTCATTATTGTCGGTTCACTGTTT-CTCATTTTAGCC 147
BSNT_05903___ 148 AACCTCCCGATCCCGGGATAC-GCTGAGTTTATGGCAAAAACGTTTGGCA 196
|||||.|||||.||.|||||| || ||.|||||||||| |.|
BPUM_3505___l 148 AACCTTCCGATTCCAGGATACAGC-GATTTTATGGCAA---------GTA 187
BSNT_05903___ 197 GCTCCTGGTCTGAA---------AAACTGGCCTACCCAGTCGACGCGACC 237
.||.|.|..|.||| |||||..|||||||.||..|.||.|||
BPUM_3505___l 188 TCTTCGGAGCAGAATGGGCCACGAAACTATCCTACCCTGTGAATGCAACC 237
BSNT_05903___ 238 TTTGAAATTATGGGTCTTGTCGCCGCGTTCGGCATCGCCTACCGGCTCGC 287
|||||.|||||||..|||||.||..|.|||||.||.||||||.||||.||
BPUM_3505___l 238 TTTGACATTATGGCACTTGTTGCAACCTTCGGGATTGCCTACAGGCTAGC 287
BSNT_05903___ 288 CGAGAAATACGGTGTTGATGCCTTGTCGGCCGGAGCCATTTCCCTTGCGG 337
.||.||.||.|..||.||||||.|.||..|.||.||.||..|..||||.|
BPUM_3505___l 288 TGAAAAGTATGCAGTGGATGCCCTATCATCTGGTGCGATCGCTGTTGCAG 337
BSNT_05903___ 338 CATTTTTATTAGCAACACCTTATCAAGTGCCTTTTATGCCGGATGGCGCG 387
|.||..|.||.||.|||||.||||||||.|||||.|..||.||.|||.|.
BPUM_3505___l 338 CTTTCCTTTTGGCGACACCCTATCAAGTTCCTTTCACACCTGAAGGCTCA 387
BSNT_05903___ 388 ACGAAAGAAATCATGGTTGGCGGCGGGATTCCGCTTTCGCTCATGGGAAG 437
||..|||..|||.|.||.||.||.||.|||||..|..|..|.|||||.||
BPUM_3505___l 388 ACAGAAGCCATCTTAGTAGGTGGGGGAATTCCAGTCACATTGATGGGCAG 437
BSNT_05903___ 438 CAAAGGCTTATTTGTCGCCATGATTATCGCAATGGTGTCCACAGAGATTT 487
.|||||.|||||.||.|||||||||||.||.|||.|.||.||.||.||||
BPUM_3505___l 438 TAAAGGGTTATTCGTTGCCATGATTATTGCCATGCTTTCAACTGAAATTT 487
BSNT_05903___ 488 ACCGCCTTATTATCCAGCGCAATTTAGTCTTCAAAATGCCGGACGGTGTC 537
||||..|.||..|||||||.|||.|.|||.|.||||||||.||.|||||.
BPUM_3505___l 488 ACCGATTCATCGTCCAGCGGAATATCGTCATTAAAATGCCTGATGGTGTA 537
BSNT_05903___ 538 CCGCCGGCGGTAAGCAAGTCATTTGTCGCGTTAATCCCCGGCTTTGCCGT 587
|||||.||.||.||.||.||.|||.||||..|.||.||.||.||||..||
BPUM_3505___l 538 CCGCCAGCAGTGAGTAAATCGTTTATCGCACTTATTCCAGGTTTTGTGGT 587
BSNT_05903___ 588 CATCTTCCTGATTTGGGCAGCCCGGCTGATTG-TTGAAGCGACACCGTTT 636
||||...||.||.||||..||..|.|| .||| ||||...||||||.|||
BPUM_3505___l 588 CATCACGCTAATCTGGGTCGCTAGACT-TTTGATTGAGATGACACCATTT 636
BSNT_05903___ 637 GAAAGCCTTCATAATATTGTAAGCGTTTTATTGGGGACTCCGCTTTCCAT 686
|||||..||||||||||..|.|..||.|||.|.||.||.|||||||||||
BPUM_3505___l 637 GAAAGTATTCATAATATCATCACGGTCTTAATTGGCACACCGCTTTCCAT 686
BSNT_05903___ 687 TCTGGGAGGAAGCCTTGGAGGAAGCCTTGTCGCCGAAGCCGTCAAAATGC 736
.||.||.||||||.|.||.|||||..||||||||...|.|||..||||||
BPUM_3505___l 687 CCTTGGTGGAAGCTTAGGCGGAAGTATTGTCGCCATGGGCGTGCAAATGC 736
BSNT_05903___ 737 TTTTATGGGCCTGCGGCCTTCACGGTGCAAACATTGTCGGCGGCGTCATG 786
||.|.|||||.|||||..||||.||.||||.|||||||||||||||||||
BPUM_3505___l 737 TTCTCTGGGCTTGCGGTATTCATGGAGCAACCATTGTCGGCGGCGTCATG 786
BSNT_05903___ 787 GCACCGATTTGGTACGGCGCAATGGATGCCAACCGGATCGCCTTCCAAGC 836
|.|||.||||||..|||.||.|||||||..|||||..||||.||||||||
BPUM_3505___l 787 GGACCAATTTGGCTCGGTGCGATGGATGAGAACCGTCTCGCATTCCAAGC 836
BSNT_05903___ 837 CGGTGAGGAGCTTCCTAAGATTTTCACCCAGCAATTTTTCGATATCTGGG 886
.||.||.|.|||.||.||.||.|||||...|||.||.||.||.||||...
BPUM_3505___l 837 AGGAGAAGTGCTGCCAAATATATTCACAGCGCAGTTCTTTGAAATCTTCA 886
BSNT_05903___ 887 TCAATATCGGCGGAAGCGGCGCCACATTGGCACTGGTTGTCACGATGTTC 936
|||||.|||||||||||||.||.||..|.||..||||..|.||||||.||
BPUM_3505___l 887 TCAATGTCGGCGGAAGCGGTGCAACGCTTGCCTTGGTGCTGACGATGATC 936
BSNT_05903___ 937 CTGCGCGCCCGAAGCAAACAAATGAAGCAGCTCGG--GAAGCTTGCGGTC 984
.|.||.|||.||||.||.||||||||.|||||.|| || |||||..|.
BPUM_3505___l 937 TTACGTGCCAGAAGTAAGCAAATGAAACAGCTTGGCCGA--CTTGCCATT 984
BSNT_05903___ 985 GGACCGGCCATCTTCAATATTAACGAACCGATTATATTCGGAATGCCGAT 1034
||.||.||.|||||.||.||.|||||||||||.||.||||||||||||||
BPUM_3505___l 985 GGGCCAGCTATCTTTAACATCAACGAACCGATCATTTTCGGAATGCCGAT 1034
BSNT_05903___ 1035 CGTCATGAACCCAATGCTCTTACTTCCGTTTATCATCACACCGCTTGTCA 1084
.|||||||||||||||||.||..|||||||||||.|.| |||...|||
BPUM_3505___l 1035 TGTCATGAACCCAATGCTTTTGATTCCGTTTATCCTTA---CGCCAATCA 1081
BSNT_05903___ 1085 CAGTGA-CACTT---ACGTACATCGGAATGAGCACCGGCCTTGTCGCAAA 1130
...||| || || ||.||.||||||||||||||.||.||||||||.||
BPUM_3505___l 1082 TGATGATCA-TTACCACATATATCGGAATGAGCACAGGGCTTGTCGCGAA 1130
BSNT_05903___ 1131 ACCGGCGGGTATCGCAGTGCCGTGGACCATGCCGCCGATCTTTTCAGGCT 1180
|||||||||.||.||.||.||.|||||.||||||||.||..|||||||||
BPUM_3505___l 1131 ACCGGCGGGGATTGCGGTCCCATGGACGATGCCGCCTATTATTTCAGGCT 1180
BSNT_05903___ 1181 ATTTGGCGACTGGAGGAAAAGTCTCAGGCGCGGTCATGCAAGCCATTAAT 1230
||.|.||.||.|||||.|||.||||.||.||.|||||||||...|||||
BPUM_3505___l 1181 ATCTCGCCACAGGAGGCAAAATCTCTGGTGCTGTCATGCAACTGATTAA- 1229
BSNT_05903___ 1231 ATTGCCG-TGTCCTTTGTTGTCTACTATCCATTCTTCAGAATGTGGGATA 1279
.|||.|| ||||.||.|.|.|.|||||.||||||||.|||||||||||||
BPUM_3505___l 1230 CTTGGCGTTGTCATTCGCTTTATACTACCCATTCTTTAGAATGTGGGATA 1279
BSNT_05903___ 1280 AGCAGAAGCTGAAAGAAGAAAACGATCTGGAGCTGGTCAAAACGCCTGCA 1329
|||||||..||||||||||||..||.||.|| ..||||| ||.
BPUM_3505___l 1280 AGCAGAAATTGAAAGAAGAAAGTGAACTAGA----AACAAAA-----GCC 1320
BSNT_05903___ 1330 GCATCAGATGACAAAGAAGCGGCTC----TGTAG 1359
.||.|.|||||.||.|..| || ||||.
BPUM_3505___l 1321 ACAACTGATGAAAATGTCG----TCAACATGTAA 1350
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