Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05900 and BPUM_3503
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_05900___licH.1.24716.seq
# -bsequence dna-align/BPUM_3503___licH2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05900___licH-BPUM_3503___licH2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05900___licH-BPUM_3503___licH2.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05900___licH
# 2: BPUM_3503___licH2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1355
# Identity: 979/1355 (72.3%)
# Similarity: 979/1355 (72.3%)
# Gaps: 52/1355 ( 3.8%)
# Score: 3383.0
#
#
#=======================================
BSNT_05900___ 1 ATGACAAAAGGATTGAAGATTGTAACGATTGGCGGAGGTTCAAGCTATAC 50
||||.|.|||||.|.||.|||||.||.||.||||||||.||.||||||||
BPUM_3503___l 1 ATGAAAGAAGGAATCAAAATTGTCACAATAGGCGGAGGATCGAGCTATAC 50
BSNT_05900___ 51 GCCCGAGCTAGTGGAGGGGTTCATTAAACGGTATGATGAGCTGCCTGTCC 100
|||.|||||.||.||.||.||.||.|||||||||.||||..||||.||..
BPUM_3503___l 51 GCCTGAGCTTGTCGAAGGATTTATCAAACGGTATCATGAATTGCCAGTAA 100
BSNT_05900___ 101 GTGAATTATGGCTTGTCGATATCCCCGAGGGCGAAGAAAAGCTGAATATT 150
..|||||||||||.||.|||||....|.|||..|.||||||.|.||.|||
BPUM_3503___l 101 AGGAATTATGGCTAGTGGATATTGAAGCGGGTCAGGAAAAGTTAAACATT 150
BSNT_05900___ 151 GTCGGCACACTCGCCAAAAGGATGGTTGAAAAAGCTGGCGTCCCGATTGA 200
||.||..|.||.||.|||.|.|||||.||||||||.||..|.||||||||
BPUM_3503___l 151 GTGGGTGCTCTTGCGAAACGCATGGTCGAAAAAGCAGGGCTACCGATTGA 200
BSNT_05900___ 201 CATTCATCTTACGCTCGACCGGAGAAAAGCGCTGAAAGACGCAGACTTTG 250
..|.||.||.|||||.|||||.||..|.||.|||||.||||||||.||||
BPUM_3503___l 201 AGTACACCTGACGCTTGACCGCAGGGAGGCCCTGAAGGACGCAGATTTTG 250
BSNT_05900___ 251 TTACGACCCAATTCCGTGTCGGACTTTTGC---AGGCAAGAGCAAAGGAT 297
|.||.||.|||||.|||||.|| .|||| |.|||.|.|||||||||
BPUM_3503___l 251 TGACAACACAATTTCGTGTAGG---GTTGCTTGAAGCACGTGCAAAGGAT 297
BSNT_05900___ 298 GAGCGCATTCCGCTAAAATATGGTGTAATTGGCCAGGAAACAAACGGCCC 347
|||.|.||.|||||.|||||.||.||.||.||.||||||||.|||||.||
BPUM_3503___l 298 GAGAGAATCCCGCTGAAATACGGCGTCATCGGTCAGGAAACGAACGGACC 347
BSNT_05900___ 348 GGGAGGCCTGTTTAAAGGATTGCGCACAATTCCGGTCATCCTTGAGATCG 397
.||.||..|.||||||||..|.||.||.|||||.||.||.||.||.||||
BPUM_3503___l 348 AGGCGGTTTATTTAAAGGTCTTCGAACCATTCCAGTGATTCTCGACATCG 397
BSNT_05900___ 398 CAAAGGACATAGAAGAGCTTTGCCCGAACGCTTGGCTTGTTAACTTCACA 447
..|||||.||.|||||||||||.||..|.||.||||||||.||.||.|||
BPUM_3503___l 398 TGAAGGATATGGAAGAGCTTTGTCCAGATGCATGGCTTGTGAATTTTACA 447
BSNT_05900___ 448 AACCCTGCCGGCATGGTAACAGAAGCCTTGCTTCGCTACGCCAACCTGAA 497
||.||.||.||.|||||.||||||||..||||.|||||..|.||.||.||
BPUM_3503___l 448 AATCCAGCAGGGATGGTCACAGAAGCTGTGCTGCGCTATACGAATCTAAA 497
BSNT_05900___ 498 GAAAGTCGTCGGTCTCTGTAATGTTCCAATCGGCATCAAAATGGGCGTAG 547
.|||||.|||||.||.||.|||||||||||.||.||.||||||||..|.|
BPUM_3503___l 498 AAAAGTAGTCGGACTATGCAATGTTCCAATTGGGATAAAAATGGGGATTG 547
BSNT_05900___ 548 CCAAAGCGCTTGATGTAGATGTGGACCGCGTAGAAGTCCAATTCGCCGGA 597
||||.||||||||.||.|||||.||.||..|.||.||.||.||.||.||.
BPUM_3503___l 548 CCAAGGCGCTTGAGGTGGATGTTGAACGGATCGAGGTACAGTTTGCAGGC 597
BSNT_05900___ 598 CTGAACCATATGGTATTTGGGCTGGATGTTTTCTTGGACGGCGTAAGTGT 647
||.|||||.|||||.|.|||..|.||.||.|..||.|||||.||.||..|
BPUM_3503___l 598 CTCAACCACATGGTTTATGGATTAGACGTGTATTTAGACGGGGTCAGCAT 647
BSNT_05900___ 648 GAAGGAGCAAGTCATCGAGGCGATGGGCGACCCGAAAAACGCGATGACGA 697
.|.|||.|||||..||||.|...|.||..|.|||||.|....|..|.|.|
BPUM_3503___l 648 TATGGATCAAGTGCTCGATGAATTAGGAAATCCGAATAGTCAGTGGTCTA 697
BSNT_05900___ 698 TGAAAAATATCTCAGGCGCCGAA-TGGGAACCGGATTTCT----TAAAAG 742
||||.||.|| |.|.|||...|| |||||||| |||| |.||||
BPUM_3503___l 698 TGAAGAACAT-TGAAGCGAAAAACTGGGAACC----TTCTTTTGTGAAAG 742
BSNT_05900___ 743 CGCTCA--ATGTCATCCCTTGCGGCTATCACCG---TTACTATTTCAAAA 787
|||.| | ||||||||.|||...|||||||| ||||||| ||||
BPUM_3503___l 743 -GCTTAGGA-GTCATCCCATGCCCGTATCACCGCTATTACTAT---AAAA 787
BSNT_05900___ 788 CAAAAGAGATGCTGGAGCACGAACTGGAAGCATCAC----AAACGGAGGG 833
|||||||.||||||||..|.||.|...|.|||.|.| |||.|||
BPUM_3503___l 788 CAAAAGATATGCTGGAAGAAGAGCAAAAGGCAGCCCAAGAAAAAGGA--- 834
BSNT_05900___ 834 CACCCGCGCAGAAGTCGTACAGAAGGTCGAAAAAGAGCTGTTCGAGCTTT 883
||..|.|||||.||.||...|.|||||||..|.||..|.||.|||||.|
BPUM_3503___l 835 -ACAAGAGCAGAGGTTGTGTTGCAGGTCGAGCACGAATTATTTGAGCTCT 883
BSNT_05900___ 884 ATAAAGATCCGAACCTTGCGATCAAACCGCCGCAGCTGGAAAAACGGGGC 933
||||||||||..|..|..|.||.|||||.|||||.||.||||||.|.|||
BPUM_3503___l 884 ATAAAGATCCCGATTTATCAATTAAACCTCCGCAACTCGAAAAAAGAGGC 933
BSNT_05900___ 934 GGAGCTTACTACAGTGATGCAGCATGTAACTTAATCAGCTCCATTTATAA 983
||.||.||||||||||||||.|||||||||||||||||||||||.|||||
BPUM_3503___l 934 GGGGCGTACTACAGTGATGCGGCATGTAACTTAATCAGCTCCATCTATAA 983
BSNT_05900___ 984 TGATAAACATGACATTCAGCCGGTGAACACAATCAATAATGGTGCAATAG 1033
||||||.||||||||.||.||.||.||.|||.|.||.|..||.||.||.|
BPUM_3503___l 984 TGATAAGCATGACATCCAACCAGTCAATACAGTGAACAGAGGGGCCATTG 1033
BSNT_05900___ 1034 CGAGCATTCCAGACGATTCCGCAGTTGAAGTGAACTGTGTGATGACGAAA 1083
|.||||||||.|..|||||.||.|||||||||||||||.|.||.||.||.
BPUM_3503___l 1034 CCAGCATTCCGGCTGATTCAGCGGTTGAAGTGAACTGTATCATCACCAAG 1083
BSNT_05900___ 1084 ACTGGCCCTAAGCCAATTGCTGTC-GGCGACTTGCCGGTGTCTGTCCGTG 1132
..|||.||.||.|||||||| |.| ||.||..||||.||..||||..|.|
BPUM_3503___l 1084 GATGGACCAAAACCAATTGC-GACGGGTGATCTGCCTGTAGCTGTGAGAG 1132
BSNT_05900___ 1133 GCCTCGTCCAGCAAATCAAATCCTTTGAACGTGTCGCGGCAGAAGCGGCA 1182
|.|||||.||.|||||||||||.|||||.|||||.||.||||||||||||
BPUM_3503___l 1133 GGCTCGTTCAACAAATCAAATCATTTGAGCGTGTGGCAGCAGAAGCGGCA 1182
BSNT_05900___ 1183 GTTACAGGTGACTACCAAACTGCACTCCTTGCCATGACGATTAACCCGCT 1232
||.|||||.||.|||.|.||.||.||..|.||.||||||||.||.|||||
BPUM_3503___l 1183 GTCACAGGAGATTACGAGACGGCTCTTGTAGCAATGACGATCAATCCGCT 1232
BSNT_05900___ 1233 TGTCCCGTC---CGATACTGTGGCCAAA-CAGATTTTAGACGAAATGCTG 1278
||||||.|| |||.|.|| |||| ||.||||||||.||||||||.
BPUM_3503___l 1233 TGTCCCATCTGACGAAATTG----CAAAGCAAATTTTAGATGAAATGCTC 1278
BSNT_05900___ 1279 GAGGCGCACAAAGCG----TATCTGCCGCAGTTTTTCAACAAAATTGAAG 1324
||.|||| |.|| |||.|.|||||.||.|||||...|.||.|||
BPUM_3503___l 1279 GAAGCGC----ATCGTGAATATTTACCGCAATTCTTCAAATCAGTTAAAG 1324
BSNT_05900___ 1325 CGTAA 1329
|.|||
BPUM_3503___l 1325 CATAA 1329
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