Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05898 and BPUM_3500

See Amino acid alignment / Visit BSNT_05898 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_05898___ywaA.1.24716.seq
#    -bsequence dna-align/BPUM_3500___ywaA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05898___ywaA-BPUM_3500___ywaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05898___ywaA-BPUM_3500___ywaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05898___ywaA
# 2: BPUM_3500___ywaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1122
# Identity:     812/1122 (72.4%)
# Similarity:   812/1122 (72.4%)
# Gaps:          60/1122 ( 5.3%)
# Score: 2802.0
# 
#
#=======================================

BSNT_05898___      1 ATGACTAAACAAACGATTCGCGTTGAATTGACATCAACAAAAAAACCGAA     50
                     |||.|.||||||.|.||.|||||||||.|.|..||||||||||||||.||
BPUM_3500___y      1 ATGCCAAAACAACCCATCCGCGTTGAACTTAGTTCAACAAAAAAACCAAA     50

BSNT_05898___     51 ACCAGACCCAA----ATCAGCTTTCGTTCGGAAGAGTGTTTACAGACCAC     96
                     ||    |.|||    ||||.|||...|||||||.|.|.||.|||||.|||
BPUM_3500___y     51 AC----CTCAATCTGATCAACTTGAATTCGGAAAAATCTTCACAGATCAC     96

BSNT_05898___     97 ATGTTTGTAATGGACTATGCGGCA--GATAAAGGTTGGTACGATCCAAGA    144
                     ||||||||.|||||.|||.|  ||  |||.||||.|||||.||.||||||
BPUM_3500___y     97 ATGTTTGTGATGGATTATTC--CATTGATCAAGGCTGGTATGACCCAAGA    144

BSNT_05898___    145 ATCATTCCTTATCAGCCCTTAT--CAATGGATCCGGCCGCAATGGTCTAT    192
                     ||.||.|||||||||.|  |||  |||||||.||.||..|.||||||||.
BPUM_3500___y    145 ATTATCCCTTATCAGGC--TATTCCAATGGACCCAGCTTCGATGGTCTAC    192

BSNT_05898___    193 CACTACGGCCAAACCGTGTTTGAAGGGTTAAAGGCTTACGTGTCAGAGGA    242
                     ||.||.||.|||.|.||.||||||||.||.||||||||.||.||.|||||
BPUM_3500___y    193 CATTATGGGCAATCTGTTTTTGAAGGCTTGAAGGCTTATGTTTCCGAGGA    242

BSNT_05898___    243 TGACCATGTTCTGCTT-TTCAGACCGGAAAAAAATATGGAACGCCTGAAT    291
                     |.|..|..|||| ||| |||.|.||||||||.||.|||||.|| ||.||.
BPUM_3500___y    243 TCAGAAAATTCT-CTTATTCCGTCCGGAAAAGAACATGGAGCG-CTTAAA    290

BSNT_05898___    292 CA-ATCAAACGACCGCCTCTGCATCCCGCAAATTGATGAAGAACAGGTTC    340
                     || |||.||.||||||||.||.|||||||||||||||..||||..||||.
BPUM_3500___y    291 CAGATCCAATGACCGCCTGTGTATCCCGCAAATTGATACAGAAACGGTTT    340

BSNT_05898___    341 TTGAAGGCTTAAAGCAGCT--TGTCGCAATTGATAAAGACTGGATTCCAA    388
                     |.||.||||||||..|.||  | |||| ||||||||.||.|||.|.||..
BPUM_3500___y    341 TAGAGGGCTTAAATGAACTCAT-TCGC-ATTGATAAGGATTGGGTACCTG    388

BSNT_05898___    389 ATGCGGAGGGCACGTCCCTTTACATCCGTCCGTTCATCATCGCAACCGAG    438
                     ||||.||||||||.|||.|.||.||||||||.|||||.||..|.||.|||
BPUM_3500___y    389 ATGCAGAGGGCACTTCCTTGTATATCCGTCCATTCATTATTTCCACTGAG    438

BSNT_05898___    439 CCTTTCCTTGGTGTTGCGGCATCTCATACGTATAAGCTCTTGATCATTCT    488
                     ||.|...|.||.|||||..|.||....|||||||||||..||||.||.||
BPUM_3500___y    439 CCGTATTTAGGCGTTGCACCGTCAAGCACGTATAAGCTGCTGATTATCCT    488

BSNT_05898___    489 TTCTCCGGTCGGCTCTTATTACAAAGAAGGCATTAAGCCGGTCAAAATCG    538
                     .|||||.||.||.|||||.||.|||||||||||..|.|||||||||||.|
BPUM_3500___y    489 ATCTCCAGTGGGATCTTACTATAAAGAAGGCATCCATCCGGTCAAAATTG    538

BSNT_05898___    539 CTGTTGAAAGTGAATTTGTCCGTGCGGTAAAAGGCGGAACAGGAAATGCC    588
                     |.|||||||..||.|||||||||||.||.|||||||||||||||||||||
BPUM_3500___y    539 CCGTTGAAAACGAGTTTGTCCGTGCCGTTAAAGGCGGAACAGGAAATGCC    588

BSNT_05898___    589 AAAACCGCAGGAAACTATGCTTCAAGCTTAAAAGCGCAGCAGGTCGCCGA    638
                     |||||.||.||||||||.||.||||||.|.||.||.|||||.||.||.||
BPUM_3500___y    589 AAAACAGCCGGAAACTACGCCTCAAGCCTTAAGGCACAGCAAGTGGCTGA    638

BSNT_05898___    639 AGAGAAAGGATTTTCCCAAGTGCTCTGGCTGGACGGCATTGAGAAGAAAT    688
                     |...|||||.|||||.|||||.||.|||||.||.||..||||||||||.|
BPUM_3500___y    639 AACCAAAGGTTTTTCACAAGTTCTTTGGCTTGATGGTGTTGAGAAGAAGT    688

BSNT_05898___    689 ACATCGAAGAAGTCGGAAGCATGAACATCTTCTTCAAAATCAACGGTGAA    738
                     |.||.||||||||||||||.|||||.||||||||.||.|||||.||.|||
BPUM_3500___y    689 ATATTGAAGAAGTCGGAAGTATGAATATCTTCTTTAAGATCAATGGGGAA    738

BSNT_05898___    739 ATCGTAACACCGATG--CTGAACGGGAGCATCCTGGAAGGCATTACGCGC    786
                     |||||.||.||  ||  .|||||||.|||||..|.||||||||.||.||.
BPUM_3500___y    739 ATCGTGACGCC--TGAATTGAACGGCAGCATTTTAGAAGGCATCACCCGT    786

BSNT_05898___    787 AATTCAGTCATCGCCTTG-----CTTAAGCATTGGGGCCTTCAAGTTTCA    831
                     ||.||.||     .||||     .|.||.||||||||..|||.|||..||
BPUM_3500___y    787 AACTCTGT-----ACTTGAGCTATTAAAACATTGGGGAATTCCAGTGACA    831

BSNT_05898___    832 GAACGAAAAATTGCGATCGATGAGGTCATCCAAGCCCATAAAGACGGCAT    881
                     ||.||.|||||..||||.||||||.|.||..||||.|||.|       ||
BPUM_3500___y    832 GAGCGTAAAATCTCGATTGATGAGTTAATTGAAGCACATCA-------AT    874

BSNT_05898___    882 C-------CTGGAAGAAGCCTTCGGAACAGGTACAGCAGCTGTTATTTCC    924
                     |       ||.||||||..|||.|||||.||.||.||.||.||.||.||.
BPUM_3500___y    875 CAGGTGAGCTTGAAGAAATCTTTGGAACTGGAACGGCGGCCGTCATCTCT    924

BSNT_05898___    925 CCAGTCGGCGAGCTGATCTGGCAGGATGAAACACTTTCGA-TCAACAACG    973
                     ||.|||||.||..|.||.|..||.|||.|..||..|..|| |||| .|.|
BPUM_3500___y    925 CCTGTCGGGGAATTAATTTATCACGATCAGCCATATGTGATTCAA-GATG    973

BSNT_05898___    974 GTGAAACAGGAGAAATCGCAAAAAAACTATATGACACGATTACAGGCATT   1023
                     ||.|||||||.|||.|..||||.|||.|.|||||..|.|||||.||.|||
BPUM_3500___y    974 GTCAAACAGGTGAAGTATCAAAGAAATTGTATGAAGCCATTACTGGTATT   1023

BSNT_05898___   1024 CAAAAAGGCGCTGTCGCAGACGAATTCGGATGGACGACCGAAGTCGCAGC   1073
                     |||||||||.|.....||||....|||||.|||||....|||||||...|
BPUM_3500___y   1024 CAAAAAGGCACACAACCAGATATCTTCGGCTGGACAGTAGAAGTCGACTC   1073

BSNT_05898___   1074 GCT-GACTGAAAGCAAG--TAA   1092
                     |.| |.|   ||.||||  |||
BPUM_3500___y   1074 GGTCGTC---AAACAAGCTTAA   1092


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