Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05866 and BPUM_3489

See Amino acid alignment / Visit BSNT_05866 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:26
# Commandline: needle
#    -asequence dna-align/BSNT_05866___ywbC.1.24716.seq
#    -bsequence dna-align/BPUM_3489___ywbC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05866___ywbC-BPUM_3489___ywbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05866___ywbC-BPUM_3489___ywbC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05866___ywbC
# 2: BPUM_3489___ywbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 401
# Identity:     278/401 (69.3%)
# Similarity:   278/401 (69.3%)
# Gaps:          37/401 ( 9.2%)
# Score: 953.0
# 
#
#=======================================

BSNT_05866___      1 ---ATGGCAAAACGAATTGACCATACAGGCATCATGGT----AAGAGATA     43
                        |.|.||..||||.|.||.||||||||.||.|||||    |    |||
BPUM_3489___y      1 TTGACGACATTACGATTAGATCATACAGGTATTATGGTTTCCA----ATA     46

BSNT_05866___     44 TTAACGCGTCCATCACATTTTATGAAGAGGTACTCGGCATGAAATTGAAG     93
                     ||.|..|||||||....|||||||||.|.||..|.|||||||||||.|||
BPUM_3489___y     47 TTGATACGTCCATTGATTTTTATGAAAAAGTCGTGGGCATGAAATTAAAG     96

BSNT_05866___     94 GATCGCATCACACACACGAACGGTGTAATCGAGCTTGCATTTCTTGGCTT    143
                     |||||||||||.||.||.|||||.||.||.||||||||||||||.|||||
BPUM_3489___y     97 GATCGCATCACTCATACAAACGGAGTGATTGAGCTTGCATTTCTCGGCTT    146

BSNT_05866___    144 TGAAGACGGACCGGAAACAGAAATTGAACTGATTCAAGGCTACAGCAGCG    193
                     |.||||.|...|.|||||.||||||||.||.||.|||||.|||||.||||
BPUM_3489___y    147 TAAAGATGAGGCAGAAACGGAAATTGAGCTCATCCAAGGGTACAGTAGCG    196

BSNT_05866___    194 AGCTTCCCGCTGAAGGAAAAGTGCACCACATTGCCCTGCTGACTGATGA-    242
                     |.||.||..|||||||||||||.|||||..|||||.|....||.||..| 
BPUM_3489___y    197 ATCTGCCATCTGAAGGAAAAGTACACCATCTTGCCTTTACAACAGACAAT    246

BSNT_05866___    243 ---CATCGCGGCTGAA--------TATACAAAAGC-GAAAAAAATGAACG    280
                        |||    ||||||        |||.||||||| |  .|||.||    
BPUM_3489___y    247 ATTCAT----GCTGAATTCAATCGTATTCAAAAGCTG--CAAATTG----    286

BSNT_05866___    281 CGAAATTTATCGACGAGGAGATCACAACACTTCCAAACGGATACCGTTAT    330
                        ||||.||.||.||.||.||.||.|||.|.|||||.||||||.|.||.
BPUM_3489___y    287 ---AATTGATTGATGAAGAAATTACGACATTACCAAATGGATACTGCTAC    333

BSNT_05866___    331 TTCTATATCGAAGGCCCTGACGGTGAGTGGATTGAGTTCTTTCAGCGATA    380
                     ||||.|.||..|||.||.|||...||.|||||.||.|||||.|||||.||
BPUM_3489___y    334 TTCTTTTTCAGAGGGCCAGACCAAGAATGGATCGAATTCTTCCAGCGCTA    383

BSNT_05866___    381 A    381
                     |
BPUM_3489___y    384 A    384


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