Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05866 and BPUM_3489
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_05866___ywbC.1.24716.seq
# -bsequence dna-align/BPUM_3489___ywbC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05866___ywbC-BPUM_3489___ywbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05866___ywbC-BPUM_3489___ywbC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05866___ywbC
# 2: BPUM_3489___ywbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 401
# Identity: 278/401 (69.3%)
# Similarity: 278/401 (69.3%)
# Gaps: 37/401 ( 9.2%)
# Score: 953.0
#
#
#=======================================
BSNT_05866___ 1 ---ATGGCAAAACGAATTGACCATACAGGCATCATGGT----AAGAGATA 43
|.|.||..||||.|.||.||||||||.||.||||| | |||
BPUM_3489___y 1 TTGACGACATTACGATTAGATCATACAGGTATTATGGTTTCCA----ATA 46
BSNT_05866___ 44 TTAACGCGTCCATCACATTTTATGAAGAGGTACTCGGCATGAAATTGAAG 93
||.|..|||||||....|||||||||.|.||..|.|||||||||||.|||
BPUM_3489___y 47 TTGATACGTCCATTGATTTTTATGAAAAAGTCGTGGGCATGAAATTAAAG 96
BSNT_05866___ 94 GATCGCATCACACACACGAACGGTGTAATCGAGCTTGCATTTCTTGGCTT 143
|||||||||||.||.||.|||||.||.||.||||||||||||||.|||||
BPUM_3489___y 97 GATCGCATCACTCATACAAACGGAGTGATTGAGCTTGCATTTCTCGGCTT 146
BSNT_05866___ 144 TGAAGACGGACCGGAAACAGAAATTGAACTGATTCAAGGCTACAGCAGCG 193
|.||||.|...|.|||||.||||||||.||.||.|||||.|||||.||||
BPUM_3489___y 147 TAAAGATGAGGCAGAAACGGAAATTGAGCTCATCCAAGGGTACAGTAGCG 196
BSNT_05866___ 194 AGCTTCCCGCTGAAGGAAAAGTGCACCACATTGCCCTGCTGACTGATGA- 242
|.||.||..|||||||||||||.|||||..|||||.|....||.||..|
BPUM_3489___y 197 ATCTGCCATCTGAAGGAAAAGTACACCATCTTGCCTTTACAACAGACAAT 246
BSNT_05866___ 243 ---CATCGCGGCTGAA--------TATACAAAAGC-GAAAAAAATGAACG 280
||| |||||| |||.||||||| | .|||.||
BPUM_3489___y 247 ATTCAT----GCTGAATTCAATCGTATTCAAAAGCTG--CAAATTG---- 286
BSNT_05866___ 281 CGAAATTTATCGACGAGGAGATCACAACACTTCCAAACGGATACCGTTAT 330
||||.||.||.||.||.||.||.|||.|.|||||.||||||.|.||.
BPUM_3489___y 287 ---AATTGATTGATGAAGAAATTACGACATTACCAAATGGATACTGCTAC 333
BSNT_05866___ 331 TTCTATATCGAAGGCCCTGACGGTGAGTGGATTGAGTTCTTTCAGCGATA 380
||||.|.||..|||.||.|||...||.|||||.||.|||||.|||||.||
BPUM_3489___y 334 TTCTTTTTCAGAGGGCCAGACCAAGAATGGATCGAATTCTTCCAGCGCTA 383
BSNT_05866___ 381 A 381
|
BPUM_3489___y 384 A 384
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