Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05860 and BPUM_3487

See Amino acid alignment / Visit BSNT_05860 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:26
# Commandline: needle
#    -asequence dna-align/BSNT_05860___ywbG.1.24716.seq
#    -bsequence dna-align/BPUM_3487___lrgB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05860___ywbG-BPUM_3487___lrgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05860___ywbG-BPUM_3487___lrgB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05860___ywbG
# 2: BPUM_3487___lrgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 692
# Identity:     480/692 (69.4%)
# Similarity:   480/692 (69.4%)
# Gaps:          25/692 ( 3.6%)
# Score: 1554.0
# 
#
#=======================================

BSNT_05860___      1 GTGTTCATCGGAATTGTAAGCTTGTTTTTAACGGTTTTGGTGTATTTAGG     50
                     .||||..|.||..|..||...|||.|.|||||.|||.|..|.|||.|.||
BPUM_3487___l      1 ATGTTAGTTGGCGTACTATTTTTGATCTTAACAGTTCTTTTATATCTCGG     50

BSNT_05860___     51 AGCAAAAAAGGTATATCAACGCTTTCCGCGTGTTTATACGTCGCCGCTAT    100
                     |.|||||..|||||||.||||....|||...||.|||...||.|||.||.
BPUM_3487___l     51 ATCAAAAGCGGTATATAAACGACACCCGAAGGTCTATGTCTCACCGTTAC    100

BSNT_05860___    101 TGGTGACGCCCGCTGTGT--TAGTCGGTC-TGCTGCTGCTGGTGAATGTC    147
                     |.||||| .||||| |||  |.||| ||| ||||..|..|.||.||..|.
BPUM_3487___l    101 TTGTGAC-ACCGCT-TGTCCTTGTC-GTCTTGCTTTTAATCGTCAACATT    147

BSNT_05860___    148 CCGTACGAGTCCTATAATCTCGGCGGCGGATTGCTGACCGATATGCTACA    197
                     ||.|||||..|.||.||||..|||||...||.|||.||..|||||||.||
BPUM_3487___l    148 CCTTACGACGCATACAATCAAGGCGGGAAATGGCTCACGAATATGCTTCA    197

BSNT_05860___    198 GCCGGCCACCGTGGCATTCGCGATCCCGCTATATAAATATTTCCCTGTTT    247
                     |||.||.||.||.||.||.||.||.||.||.|||||.|||||.|...||.
BPUM_3487___l    198 GCCTGCGACTGTTGCTTTTGCCATTCCCCTCTATAAGTATTTTCACATTC    247

BSNT_05860___    248 TAAAGAAATACGCAGTGGAAATTATTTTGAATGTGGCCGTCGGTTCATG-    296
                     |.|||||..|.||||||||||||||||||||||||||...|||||| || 
BPUM_3487___l    248 TGAAGAAGCATGCAGTGGAAATTATTTTGAATGTGGCTTGCGGTTC-TGT    296

BSNT_05860___    297 CATCGCGATTATTTCTACCGCTCTTATTGCGAAATGGCTTCACCTCGGCA    346
                     |||.||.||..|.|||||.||..||||.|||||.|.|.|.|||.|.|..|
BPUM_3487___l    297 CATTGCCATCCTATCTACGGCATTTATCGCGAAGTTGTTCCACTTGGATA    346

BSNT_05860___    347 CCGGCTTAATTGACAGCCTCGTCCCGAGATCAGTGACAACGCCGATCGCG    396
                     |.|||.|.|||||.||.||.|||||.||.||.||.||||||||..|.|||
BPUM_3487___l    347 CAGGCCTTATTGAAAGTCTTGTCCCAAGGTCGGTCACAACGCCAGTGGCG    396

BSNT_05860___    397 ATGAACGTATCTGAAATGATCGGCGGAATGCCTGCCGTCACAGCCGTGTT    446
                     ||||..||.||.||||||||.|||||||||||..||||.||.||.||.||
BPUM_3487___l    397 ATGAGTGTGTCAGAAATGATTGGCGGAATGCCGTCCGTTACGGCAGTATT    446

BSNT_05860___    447 TGTGATTTTAACCGCTTTGCTCGGCACAGTGATCGGTCCGATGGTCATCC    496
                     .||.|||||||||||..||.|.||..||.|.||||||||.|||.||||.|
BPUM_3487___l    447 CGTCATTTTAACCGCACTGTTTGGGTCAATCATCGGTCCAATGATCATTC    496

BSNT_05860___    497 GTTATTTCCGCATTGATAACGAAATCGCGCGGGGCGTGCTGCTCGGCACA    546
                     ||||||||||.||.|||||.||.||.||...||||||..||||.||.|||
BPUM_3487___l    497 GTTATTTCCGTATCGATAATGACATTGCCATGGGCGTCTTGCTTGGTACA    546

BSNT_05860___    547 AGCGCGCACGGAGCGGGAACGTCAAAGGCATTTGAGCTTAGCTCTGTGTC    596
                     .|.||.|||||.||.|||||.||||||||||||||..|.|||||.||.||
BPUM_3487___l    547 GGTGCACACGGGGCAGGAACATCAAAGGCATTTGAAATGAGCTCCGTCTC    596

BSNT_05860___    597 CGGCACGATTTCCAGCGTATCGATGATCTTAGCTGCGATTATGACGCTTT    646
                     .||.|||||.||.||||||||.|||||..|..|.||.||.||.||..|.|
BPUM_3487___l    597 AGGGACGATCTCAAGCGTATCCATGATTATTTCAGCCATCATTACTTTAT    646

BSNT_05860___    647 GCGCGGCGCCGTT----------TTTGCTTTCATTTATGTAA    678
                     |.||.|||||..|          |||||.|       |.|||
BPUM_3487___l    647 GTGCAGCGCCTATCCTCATGTCGTTTGCCT-------TATAA    681


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