Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05847 and BPUM_3478

See Amino acid alignment / Visit BSNT_05847 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:26
# Commandline: needle
#    -asequence dna-align/BSNT_05847___ywcB.1.24716.seq
#    -bsequence dna-align/BPUM_3478___ywcB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05847___ywcB-BPUM_3478___ywcB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05847___ywcB-BPUM_3478___ywcB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05847___ywcB
# 2: BPUM_3478___ywcB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 325
# Identity:     228/325 (70.2%)
# Similarity:   228/325 (70.2%)
# Gaps:          26/325 ( 8.0%)
# Score: 719.5
# 
#
#=======================================

BSNT_05847___      1 ATG------TACAAAGCTGATTATAAACAGATTGCTGCAACGCCGTCTTT     44
                     |||      .|.||||.|.|.|||||..||.||||.||..|...|..|||
BPUM_3478___y      1 ATGGCAGACAAAAAAGTTCACTATAAGAAGGTTGCCGCTTCAGAGGATTT     50

BSNT_05847___     45 TC--AAGCTTTTTTAAAGCAGAAACGCGCTTTTATTGTTCCTTCTG-CGA     91
                     ||  ||.|  ||.|..||.|.||||||...|||||.||.|| ..|| |||
BPUM_3478___y     51 TCGAAAAC--TTCTCGAGGAAAAACGCAGATTTATCGTACC-GATGACGA     97

BSNT_05847___     92 TTTTCTTTTTTGTCTTTTATTTTTCACTTCCTGTTTTGACATCTTATTTC    141
                     |||||||||||.|||||||.|||||||||||.|||...|||||.||.|||
BPUM_3478___y     98 TTTTCTTTTTTCTCTTTTACTTTTCACTTCCGGTTGCTACATCCTACTTC    147

BSNT_05847___    142 ACCTTTTTGAATGCACCGGCCATTGGAGCTGTTTCATGGGCTTGGCTGTT    191
                     |||||||||||..|.|||||.|||||.||..||||||||||.|||.|.||
BPUM_3478___y    148 ACCTTTTTGAACACGCCGGCAATTGGCGCGATTTCATGGGCGTGGTTATT    197

BSNT_05847___    192 CGCCATCGCCCAATTCGCTATGACCTGG--ATACTGAGTACTGTGTATTC    239
                     ||||.||.|.|||||.|..|||||||||  ||..||.|.||  |.|||.|
BPUM_3478___y    198 CGCCCTCACACAATTTGTGATGACCTGGGTATTATGTGGAC--TTTATGC    245

BSNT_05847___    240 CCGGAGAGCCGCTCATTTCGATCGGTATGTAAGCGCTTTAAAA---GAGG    286
                     ...||.|||.|||||.|||||....||||||||||||||||||   ||  
BPUM_3478___y    246 GAAGAAAGCTGCTCAGTTCGACAAATATGTAAGCGCTTTAAAAATTGA--    293

BSNT_05847___    287 ATCTGAAGGGTGA--ACAGATATGA    309
                     ||| ||..|||||  || || ||||
BPUM_3478___y    294 ATC-GAGAGGTGATGAC-GA-ATGA    315


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.