Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05835 and BPUM_3463
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_05835___qoxB.1.24716.seq
# -bsequence dna-align/BPUM_3463___qoxB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05835___qoxB-BPUM_3463___qoxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05835___qoxB-BPUM_3463___qoxB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05835___qoxB
# 2: BPUM_3463___qoxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1987
# Identity: 1563/1987 (78.7%)
# Similarity: 1563/1987 (78.7%)
# Gaps: 65/1987 ( 3.3%)
# Score: 6164.5
#
#
#=======================================
BSNT_05835___ 1 ATGAAATTCAAATGGGACGAATTTTTCGTAACTGGTGACCCATTAATTCT 50
|||.|.||.||||||||.||.|||||.||||||||.||||||||||||||
BPUM_3463___q 1 ATGCATTTGAAATGGGATGAGTTTTTTGTAACTGGAGACCCATTAATTCT 50
BSNT_05835___ 51 GGGCGCACAAGTTTCCATTGCGCTTTCAACCATTGCCATTATTTTTGTAC 100
.||.||.|||.||||.||.||.|||.|..|||||||.||..|.|||||..
BPUM_3463___q 51 TGGTGCGCAAATTTCTATCGCTCTTACTTCCATTGCTATCGTGTTTGTTT 100
BSNT_05835___ 101 TGACTTACTTTAAAAAGTGGAAATGGCTGTGGTCTGAATGGATAACTACT 150
|.||.|||||||||||||||||||||||.|||...||||||.||||..|.
BPUM_3463___q 101 TAACCTACTTTAAAAAGTGGAAATGGCTCTGGAAAGAATGGCTAACATCA 150
BSNT_05835___ 151 GTTGACCATAAAAAACTCGGAATCATGTATATTATATCTGCTGTAATTAT 200
|||||.||||||||.||.||.|||||||||||..|..|||||||.|||||
BPUM_3463___q 151 GTTGATCATAAAAAGCTTGGGATCATGTATATCCTTGCTGCTGTGATTAT 200
BSNT_05835___ 201 GTTATTCCGCGGCGGTGTCGACGGTCTGATGATGCGTGCCCAGCTAGCGC 250
|||.||||||||.||.||.|||||.|||||||||||.||.|||||.||||
BPUM_3463___q 201 GTTCTTCCGCGGTGGGGTAGACGGACTGATGATGCGCGCACAGCTGGCGC 250
BSNT_05835___ 251 TTCCGAATAACAGTTTTTTAGACTCAAACCACTATAATGAAATTTTTACA 300
||||.|||||.|..||||||||.||.||||||||||||||||||||.|||
BPUM_3463___q 251 TTCCTAATAATACGTTTTTAGATTCCAACCACTATAATGAAATTTTCACA 300
BSNT_05835___ 301 ACTCACGGTACAATCATGATCATCTTCATGGCGATGCCGTTCTTAATCGG 350
||.||.|||||.||||||||..|.||||||||||||||.||.|||||.||
BPUM_3463___q 301 ACGCATGGTACGATCATGATTTTATTCATGGCGATGCCATTTTTAATTGG 350
BSNT_05835___ 351 TCTTATCAACGTTGTTGTGCCTCTTCAAATCGGTGCCCGCGACGTTGCGT 400
|.|.||||||||.|||||.|||||||||||.|||||.||.||||||||.|
BPUM_3463___q 351 TTTAATCAACGTCGTTGTACCTCTTCAAATTGGTGCGCGTGACGTTGCAT 400
BSNT_05835___ 401 TCCCTTACTTGAACAACCTGAGCTTCTGGACGTTCTTTGTAGGGGCGATG 450
||||||||||||||||||||||.||||||||.||..|.||.||.||||||
BPUM_3463___q 401 TCCCTTACTTGAACAACCTGAGTTTCTGGACATTTATGGTCGGAGCGATG 450
BSNT_05835___ 451 CTTTTCAATATTTCTTTCGTTATCGGAGGTTCTCCGAACGCAGGCTGGAC 500
||.|||||.|||||.||||||||.|||||.||.||.|..|||||||||||
BPUM_3463___q 451 CTGTTCAACATTTCCTTCGTTATTGGAGGATCACCAAGTGCAGGCTGGAC 500
BSNT_05835___ 501 GAGTTATATGCCGCTTGCAAGTAACGA-----CATGAGCCCTGGGCCGGG 545
||||||.||||||||.||..|.||.|| || ||.||.||.||
BPUM_3463___q 501 GAGTTACATGCCGCTCGCCGGAAATGATTTCTCA-----CCAGGACCTGG 545
BSNT_05835___ 546 TGAGAACTACTACCTCCTCGGACTTCAGATTGCCGGTATCGGTACCCTGA 595
..|||||||.|||.|.|||||.||.||.|||||.|||||.|||||.||.|
BPUM_3463___q 546 ACAGAACTATTACTTGCTCGGGCTCCAAATTGCAGGTATTGGTACACTTA 595
BSNT_05835___ 596 TGACAGGGATCAACTTTATGGTAACAATCTTAAAAATGAGAACAAAAGGC 645
||||.||.||.|||||.|||||.||.||||||||||||.|.||||||||.
BPUM_3463___q 596 TGACGGGTATTAACTTCATGGTGACCATCTTAAAAATGCGTACAAAAGGT 645
BSNT_05835___ 646 ATGACATTAATGCGTATGCCGATGTTCACATGGACAACACTGATCACAAT 695
|||||..|.|||||||||||.|||||.||||||||||||.|||||||...
BPUM_3463___q 646 ATGACGCTCATGCGTATGCCAATGTTTACATGGACAACATTGATCACGTC 695
BSNT_05835___ 696 GGTTATTATCGTGTTTGCGTTCCCTGTACTTACAGTAGCATTGGCACTTT 745
.||.||.|||||.||.||.|||||||||||.|||||.||.||.||||||.
BPUM_3463___q 696 TGTCATCATCGTATTCGCATTCCCTGTACTAACAGTTGCTTTAGCACTTA 745
BSNT_05835___ 746 TATCATTTGATCGTTTGTTCGGCGCT-CACTTTTTCACATTGGAAGCAGG 794
|..|||||||||||||.|||||..|| || ||.||.|||.|.||||||||
BPUM_3463___q 746 TGACATTTGATCGTTTATTCGGTTCTGCA-TTCTTTACACTCGAAGCAGG 794
BSNT_05835___ 795 CGGTATGCCGATGCTTTGGGCTAACTTGTTCTGGATTTGGGGACATCCTG 844
|||||||||.|||||||||||.|||.|.||||||||||||||||||||||
BPUM_3463___q 795 CGGTATGCCAATGCTTTGGGCGAACCTTTTCTGGATTTGGGGACATCCTG 844
BSNT_05835___ 845 AAGTATATATCGTTATTCTTCCGGCGTTTGGTATTTTCTCAGAAATCATC 894
|.||||||||||||||.||.|||||.||.||||||||||||||||||.|.
BPUM_3463___q 845 AGGTATATATCGTTATCCTGCCGGCTTTCGGTATTTTCTCAGAAATCTTT 894
BSNT_05835___ 895 TCAAGCTTTGCAAGAAAACAATTGTTTGGTTACAAAGCGATGGTTGGTTC 944
.|.|..||..||||||||||.|||||||||||||||||||||||||..||
BPUM_3463___q 895 GCGACGTTCTCAAGAAAACAGTTGTTTGGTTACAAAGCGATGGTTGTATC 944
BSNT_05835___ 945 TATTATCGCCATCTCTGTATTGAGTTTCTTAGTTTGGACTCACCACTTCT 994
.|||.|.||.||||||||..|.||||||.|.||.|||..|||||||||||
BPUM_3463___q 945 GATTGTGGCAATCTCTGTTCTTAGTTTCCTTGTGTGGGTTCACCACTTCT 994
BSNT_05835___ 995 TCACAATGGGGAACAGTGCGTCCGTTAACTCATTCTTCTCAATTACAACA 1044
|.|||||||||||||||||..|.|||||||||||||||||.|||||||||
BPUM_3463___q 995 TTACAATGGGGAACAGTGCAGCGGTTAACTCATTCTTCTCGATTACAACA 1044
BSNT_05835___ 1045 ATGGCAATCTCAATCCCAACCGGGGTTAAAATCTTTAACTGGCTCTTTAC 1094
|||||.||.||..|.|||||.||.||.|||||||||||||||||||||||
BPUM_3463___q 1045 ATGGCGATTTCCGTACCAACAGGTGTGAAAATCTTTAACTGGCTCTTTAC 1094
BSNT_05835___ 1095 AATGTATAAAGGCCGAATCAGCTTTACAACACCTATGCTGTGGGCGCTTG 1144
.||||||..||||||.|||||.|||||..||||.|||||.|||||.||||
BPUM_3463___q 1095 GATGTATCGAGGCCGTATCAGTTTTACTTCACCAATGCTTTGGGCACTTG 1144
BSNT_05835___ 1145 CGTTCATTCCTAACTTCGTTATCGGCGGGGTTACAGGGGTTATGCTTGCG 1194
..|||||.||.|||||.||||||||.||.||.||.|||||||||||||||
BPUM_3463___q 1145 GTTTCATCCCGAACTTTGTTATCGGTGGTGTCACTGGGGTTATGCTTGCG 1194
BSNT_05835___ 1195 ATGGCAGCAGCGGATTATCAATACCATAATACGTACTTCCTTGTATCTCA 1244
||||||||.||||||||.||.||||||||||||||||||||.|||||.||
BPUM_3463___q 1195 ATGGCAGCTGCGGATTACCAGTACCATAATACGTACTTCCTAGTATCCCA 1244
BSNT_05835___ 1245 CTTCCACTATGTGCTGATTGCGGGTACTGTATTTGCTTGTTTCGCCGGAT 1294
||||||||||||..|.||.||.||||||||.|||||.|||||.||.||..
BPUM_3463___q 1245 CTTCCACTATGTATTAATCGCAGGTACTGTCTTTGCATGTTTTGCTGGTC 1294
BSNT_05835___ 1295 TTATTTTCTGGTATCCAAAAATGTTCGGCCACAAGCTGAACGAAAGAATT 1344
||.||||||||||||||||||||||.||..|||||.|.|||||||||||.
BPUM_3463___q 1295 TTGTTTTCTGGTATCCAAAAATGTTTGGTTACAAGTTAAACGAAAGAATC 1344
BSNT_05835___ 1345 GGAAAATGGTTCTTCTGGATCTTTATGATCGGGTTCAATATTTGTTTCTT 1394
||.|||||||||||||||.|.||.||||||||.||.||.||.||||||||
BPUM_3463___q 1345 GGCAAATGGTTCTTCTGGGTATTCATGATCGGATTTAACATCTGTTTCTT 1394
BSNT_05835___ 1395 CCCGCAATATTTCTTGGGGCTTCAAGGCATGCCTCGCCGTATTTACACAT 1444
||||||.||.|||||.||.||.|||||.|||||..|.||||||||.||.|
BPUM_3463___q 1395 CCCGCAGTACTTCTTAGGACTGCAAGGAATGCCAAGACGTATTTATACGT 1444
BSNT_05835___ 1445 ACGGACC-GAATGACGGCTGGACAACATTGAACTTTATCTCAACAGTCGG 1493
||||||| ||| ||.||||||||..||.|.||||||||.||||||.|.||
BPUM_3463___q 1445 ACGGACCAGAA-GATGGCTGGACTGCACTAAACTTTATTTCAACAATTGG 1493
BSNT_05835___ 1494 AGCTTTCATGATGGGTGTAGGATTCTTAATCCTTTGCTATAACATCTACT 1543
.||.||.|||||||||||.||||||.|.|||||||||||.|||||.||||
BPUM_3463___q 1494 TGCATTTATGATGGGTGTCGGATTCATCATCCTTTGCTACAACATTTACT 1543
BSNT_05835___ 1544 ACAGCTTCCGTTACTCTACTCGTGAAATCAGCGGAGATTCA--TGGGGTG 1591
||||||...|..||.|.|..||||||.|....||||| || |||||.|
BPUM_3463___q 1544 ACAGCTGGAGACACGCGAAACGTGAAGTGTCTGGAGA--CAGCTGGGGAG 1591
BSNT_05835___ 1592 TGGGACGTACGCTTGATTGGGCGACTTCTTCTGCGATTCCGCCGCATTAC 1641
..||||||||.|||||.||||||||.||||||||.||||||||||||||.
BPUM_3463___q 1592 AAGGACGTACTCTTGACTGGGCGACATCTTCTGCAATTCCGCCGCATTAT 1641
BSNT_05835___ 1642 AACTTTGCGGTGCTTCCTGAAGTCAAATCTCAAGATGCATTCCTGCATAT 1691
||||||||.|..|||||.|||||.|.|.|.|.|||||||||||..||| |
BPUM_3463___q 1642 AACTTTGCAGCACTTCCAGAAGTGACAACACCAGATGCATTCCATCAT-T 1690
BSNT_05835___ 1692 GAAAGAAGAAAAAACTGAAT-TATAC------CCT--GAAAGCAAATTCA 1732
| ||||.|||| .||| ||.|| ||| ||||| ||||||
BPUM_3463___q 1691 G---GAAGCAAAA---CAATGTAGACGTTCATCCTGAGAAAG--AATTCA 1732
BSNT_05835___ 1733 AGAAAATCCATATGCCAAGCAACTCAGGCAGACCGTTCTTTATGTCTG-- 1780
|||||||.||.|||||...|||.|||||.||||||.|..|.|||||||
BPUM_3463___q 1733 AGAAAATTCACATGCCGCACAATTCAGGTAGACCGCTTATCATGTCTGCA 1782
BSNT_05835___ 1781 TTGCCTTCGGTCTCGCTGGCTTTGGACTTGTCTTTGAATGGTACTGGATG 1830
|| ||||||.||.|..|..||.||.|||||.|||||||||||||||||.
BPUM_3463___q 1783 TT--CTTCGGACTTGGAGCATTCGGTCTTGTATTTGAATGGTACTGGATT 1830
BSNT_05835___ 1831 GGCGTAGTCGGATTGATCGGAGTCCTGCTCTGC-ATGGTTCTGCGTTCAT 1879
|||||..|.||.||.|||||.|| .|.|.|..| |||.||.|.|||||||
BPUM_3463___q 1831 GGCGTTATTGGCTTAATCGGTGT-ATTCGCAACAATGATTTTACGTTCAT 1879
BSNT_05835___ 1880 TCGAATACGACAACGGCTACTACATTAGTGTTGATGAAATAAAAGAGACG 1929
|.|||||.||..|.||||||||.|||..||||||.|||.|.|..||.||.
BPUM_3463___q 1880 TTGAATATGATGATGGCTACTATATTCCTGTTGAAGAAGTGATTGAAACA 1929
BSNT_05835___ 1930 GAAAGAAAGATTTCCGAATAA---------------- 1950
||.|.||| ||||||
BPUM_3463___q 1930 GAGAAAAA-------GAATAAGGAGGCGCAAAAGTAA 1959
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