Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05834 and BPUM_3462
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_05834___qoxC.1.24716.seq
# -bsequence dna-align/BPUM_3462___qoxC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05834___qoxC-BPUM_3462___qoxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05834___qoxC-BPUM_3462___qoxC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05834___qoxC
# 2: BPUM_3462___qoxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 630
# Identity: 465/630 (73.8%)
# Similarity: 465/630 (73.8%)
# Gaps: 27/630 ( 4.3%)
# Score: 1655.0
#
#
#=======================================
BSNT_05834___ 1 ATGGAACAT-------GCAGAACACGGCAATTCTAACGCGCCTATGGAAT 43
||||.|||| ||| ||.||.|.||.||.||..|.||||
BPUM_3462___q 1 ATGGGACATAATGATAGCA-------GCTATGCAAATGCACCGCTTGAAT 43
BSNT_05834___ 44 ATCAATCTGAAACCGGCAGACTTAATATTCTCGGGTTTTGGATCTTTTTA 93
||||.||||||||.||..|..|.||.|||||.||.||.|||||.||..|.
BPUM_3462___q 44 ATCAGTCTGAAACGGGACGTTTAAACATTCTTGGTTTCTGGATATTCCTT 93
BSNT_05834___ 94 GGGGCAGAAATTGTGTTGTTCTCAACACTATTTGCAACCTTCTTCGTTCT 143
||.||.|||||.|||||.|||||||||||.|||||.||||.|||.|||||
BPUM_3462___q 94 GGCGCGGAAATCGTGTTATTCTCAACACTTTTTGCGACCTACTTTGTTCT 143
BSNT_05834___ 144 TAAAAACAGAACAGCTGGAGGTGTCTTGCCAGACGAACTATTTGAAGTCA 193
|.|...||||||||||||.||.||.||.||||..||.||.|||||..|.|
BPUM_3462___q 144 TCATGGCAGAACAGCTGGCGGCGTTTTACCAGCTGAGCTGTTTGATATGA 193
BSNT_05834___ 194 ATCTGGTAATGATTATGACGTTCTTGCTGCTGATCAG--CAGCTTTACCT 241
|.||.|||.||||.|||||.|||.||||..||.|.|| || |||||.|
BPUM_3462___q 194 AGCTTGTATTGATCATGACATTCCTGCTATTGGTTAGTTCA--TTTACAT 241
BSNT_05834___ 242 GCGGGATCGCTGTTCATGAAATGCGCCGCGGAAGTTTAAAAGGCGTAGTC 291
|.|||||.||||||||||||||||||||.||||||..||||||.||.|||
BPUM_3462___q 242 GTGGGATTGCTGTTCATGAAATGCGCCGTGGAAGTACAAAAGGGGTTGTC 291
BSNT_05834___ 292 ATTTGGACAATTATCACTCTTCTTCTCGGTGCCGGCTTCGTCGGATGCGA 341
||||||||.|||.|.||.||.|||||.|||||.||.||.||.||||..||
BPUM_3462___q 292 ATTTGGACGATTCTTACACTGCTTCTAGGTGCAGGATTTGTTGGATTTGA 341
BSNT_05834___ 342 GATCAACGAGTTTGTTCACTATGTACATGAAGGAGCG-GC-TCTCAGTAC 389
|.|....|||||..|.||.||||||||.||.||.||| || || || |||
BPUM_3462___q 342 GCTTTTTGAGTTCTTCCATTATGTACACGAGGGTGCGAGCATC-CA-TAC 389
BSNT_05834___ 390 AAGTGCGTTCTGGTCTGGATTCTTTGTTTTACTT-GGAACTCACGGAACT 438
||||||||..|||||||.|||||||||..| ||| ||||||||||||...
BPUM_3462___q 390 AAGTGCGTATTGGTCTGCATTCTTTGTACT-CTTAGGAACTCACGGATTA 438
BSNT_05834___ 439 CACGTAACAATCGGGATTTTCTGGATCACAGGAATTCTGATTCAGTTGAA 488
||||||.|.|||||.||.||||||||.||.||..|..||.|.||..|.||
BPUM_3462___q 439 CACGTATCTATCGGTATCTTCTGGATTACCGGGGTCTTGTTCCAAATTAA 488
BSNT_05834___ 489 GAAACGCGGCTTAACTCCGCAAACTTCATCTAAAATCTTTATCTCAAGCT 538
.|||||.||.||||||||.|||||..||||.||.||.|||||||||||..
BPUM_3462___q 489 AAAACGTGGATTAACTCCACAAACAGCATCGAAGATTTTTATCTCAAGTC 538
BSNT_05834___ 539 TGTACTGGCACTTCTTAGATGTTGTATGGATTTTCATCTTTACAGGTGTC 588
|.||||||||.|||.|.||||||||||||||.||||||||.||||.|||.
BPUM_3462___q 539 TATACTGGCATTTCCTTGATGTTGTATGGATCTTCATCTTCACAGCTGTT 588
BSNT_05834___ 589 TATCTCATGGGATTGGGGGG---TCTGTAA 615
||..|.||.|||||.||||| |.|||.|
BPUM_3462___q 589 TACTTGATCGGATTAGGGGGGCTTTTGTGA 618
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