Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05826 and BPUM_3457
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence dna-align/BSNT_05826___ywcH.1.24716.seq
# -bsequence dna-align/BPUM_3457___ywcH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05826___ywcH-BPUM_3457___ywcH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05826___ywcH-BPUM_3457___ywcH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05826___ywcH
# 2: BPUM_3457___ywcH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1068
# Identity: 687/1068 (64.3%)
# Similarity: 687/1068 (64.3%)
# Gaps: 132/1068 (12.4%)
# Score: 1983.5
#
#
#=======================================
BSNT_05826___ 1 ATGGTTTCATTAAGTATATTAGATCAATCTCCAGT-ATCAGAGGGCA-GC 48
||| ..||||||||||.|.|||||||||||..| ||..||| | ||
BPUM_3457___y 1 ATG---AAATTAAGTATACTGGATCAATCTCCTTTAATTGGAG---ATGC 44
BSNT_05826___ 49 AA----TGCAGAAACGGCCTTACAGCAAACCGTTGCGCTTGCCCAAGC-T 93
|| |||.||| |||||..|||||||.|||| ..|||.|.||.| .
BPUM_3457___y 45 AACTCCTGCTGAA---GCCTTGAAGCAAACGGTTG-AATTGGCAAAACAG 90
BSNT_05826___ 94 GCTGA-----GGACCTTGGATATAAGAGATTTTGGGTTTCTGAGCATCAC 138
||.|| || ||.|||.|..||||||||||.||.|||||||||
BPUM_3457___y 91 GCAGAAAAGTGG-----GGCTATCACCGATTTTGGGTATCAGAGCATCAC 135
BSNT_05826___ 139 TTTTCAAAACGGCTGGCAGGGTCCAGTCCTGAGGTGCTAATCAGTCATAT 188
||||||||.|||||.|||||.||.|||||.||||||||..||.|||||.|
BPUM_3457___y 136 TTTTCAAACCGGCTTGCAGGATCGAGTCCAGAGGTGCTCCTCGGTCATTT 185
BSNT_05826___ 189 AGC-GGCGAAA----ACAAAGCGAATCCGTGTTGGATCAGGAGGAGTCAT 233
|.| |.||..| ||| .||.|||.||||.|||||.||.||.||
BPUM_3457___y 186 ATCAGCCGTTACGTCACA-----TATACGTATTGGCTCAGGCGGTGTGAT 230
BSNT_05826___ 234 GCTGCCGCATTACAGTGCTTATAAAGTAGCTGAAAACTTTCGTGTTCTGG 283
|||||||||.|||||.||.|||||||||||.||.|||||..|.|||||.|
BPUM_3457___y 231 GCTGCCGCACTACAGCGCGTATAAAGTAGCAGAGAACTTCAGGGTTCTCG 280
BSNT_05826___ 284 AGGGGCTGACACCAGGAAGAATTGACCTGGGGCTTGGCAGAGCACCGGGG 333
|||..||..|.||.||.|||||.||.||.|||.||||..|.||.||.||.
BPUM_3457___y 281 AGGCTCTCGCTCCTGGCAGAATCGATCTTGGGATTGGACGTGCTCCTGGC 330
BSNT_05826___ 334 GGAATGCCGAT--------------TGCATCATGGGCGCTGAATGACGGC 369
||.|||||||| |.|||||||| ||||.||
BPUM_3457___y 331 GGTATGCCGATTTCTTCCATTGCTCTTCATCATGG----TGAACGA---- 372
BSNT_05826___ 370 GGTAAGCG-CAATGCTGATCAGTATCCGCAGCAAATCAAGGAGCTGACCA 418
||.|| |.| |.||||||.|||||..|||||.|..|.|||.|||...
BPUM_3457___y 373 ---AAACGTCTA-GGTGATCAATATCCTGAGCAAGTAGAAGAGTTGAAGG 418
BSNT_05826___ 419 TGTATTTGCATGATTTGGCGGATGA----TAAACACCGTTTTCCGAATCT 464
|.|||||.||.||..|.||.||||| ||..|| ||.||..||.|
BPUM_3457___y 419 TCTATTTACACGACCTAGCAGATGAATTTTATCCA----TTGCCTCATTT 464
BSNT_05826___ 465 GACCGCTGCGCCGCATATTTCA-ACGGCTCCGGATGTGTGGCTGCTCGGC 513
.||||||.|.||| |.|.|..| ||.||.||.||.||.|||.||||.||.
BPUM_3457___y 465 AACCGCTTCTCCG-AAAGTAGAGACTGCACCCGAGGTATGGATGCTTGGT 513
BSNT_05826___ 514 TCATCTGGAGAAAGCGCGCTGCTCGCAGCTGAATCTGGCGCTGGCTATAT 563
||.|||||||.|||.||....||.||.||..||.|.||.||.|||||||.
BPUM_3457___y 514 TCCTCTGGAGGAAGTGCAAGACTTGCGGCGAAAGCAGGTGCAGGCTATAC 563
BSNT_05826___ 564 GTTTGCCCATTTTATCAATGGAGAGGGCGGAGAGGGTACTGTCAG-ACAG 612
||||||.|..|||||||||||.||.||.|||||.|.|.|||| || |||.
BPUM_3457___y 564 GTTTGCTCTATTTATCAATGGTGAAGGTGGAGAAGATTCTGT-AGAACAA 612
BSNT_05826___ 613 TATAAGAGGAGATTCAAACCATCTGTGTTAGGAGATACGCCTCGAGCGGC 662
||||..|...|.|||.|||||||.|..||.||.||...|| ||.|||..
BPUM_3457___y 613 TATATCAACCGGTTCGAACCATCAGCATTCGGTGAGGAGC--CGCGCGTT 660
BSNT_05826___ 663 AG--TTGCTGTTTTTGTTCTTTGTGCTGACACGGAGGAGAAGGCAGAGGA 710
|| |.||.||.||.|||.|.||||||||.||.|||||..|||||||..|
BPUM_3457___y 661 AGTCTGGCGGTCTTCGTTTTATGTGCTGAAACTGAGGAACAGGCAGAAAA 710
BSNT_05826___ 711 GCTTGGGGCTGT-------GCTTGAT-TTTACACTTTTGGCGGGA--GAG 750
.|| |||.|| |.||.|| ||||| |||.| | ||.
BPUM_3457___y 711 ACT---GGCAGTCAGTTTAGATTTATCTTTAC----TTGCC---AATGAA 750
BSNT_05826___ 751 CAGGG--TATTCCTTTAGAGGGAGTCCCTTCGTATGAA---GCTGTTCGG 795
||||| .|..|| |.||||||.|.|||||.|||||| ||
BPUM_3457___y 751 CAGGGGCAAAACC--TCGAGGGATTTCCTTCATATGAAAAGGC------- 791
BSNT_05826___ 796 AAAA----ATACGTATTCTCCTTATGAACAGAGACGAATTGCTGATAATC 841
|.|| ||.|.|||..|||.||||||||.|.|||..|.||||..||||
BPUM_3457___y 792 ACAAGCATATTCCTATAGTCCATATGAACAAAAACGTGTGGCTGCCAATC 841
BSNT_05826___ 842 G--AAATCGAATGATTGTTGGTACGAAAGAACA-----GGTTAAGAAGCG 884
| ||| |||||.|.|||||.||| .|| .||.||.||||.
BPUM_3457___y 842 GTCAAA--GAATGGTGGTTGGGACG-----CCATCTTCTGTGAAAAAGCA 884
BSNT_05826___ 885 GCTGTTAGCTTTGAGTAAAGCGTATGAAACAGAGGAAATCATGGTGGTGA 934
||||...||..|.|..||.||.|||...|||.|.|||.|.||.|..||||
BPUM_3457___y 885 GCTGACGGCACTAACGAAGGCTTATCGTACAAATGAAGTGATCGCCGTGA 934
BSNT_05826___ 935 CCATCACGCATCATTTTGAAGATAAGCTCCGATCGTATCGATTATTGCAG 984
|||||||.||.|...|..||||...||||..|||.|||||.|||||..|.
BPUM_3457___y 935 CCATCACTCACCGCATGCAAGACCGGCTCACATCCTATCGTTTATTAAAA 984
BSNT_05826___ 985 GAGGCGTTTGCTGACTGA 1002
||.||.||||.||..|.|
BPUM_3457___y 985 GAAGCCTTTGATGCATAA 1002
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