Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05813 and BPUM_3444
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_05813___ung.1.24716.seq
# -bsequence dna-align/BPUM_3444___ung.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05813___ung-BPUM_3444___ung.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05813___ung-BPUM_3444___ung.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05813___ung
# 2: BPUM_3444___ung
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 706
# Identity: 500/706 (70.8%)
# Similarity: 500/706 (70.8%)
# Gaps: 53/706 ( 7.5%)
# Score: 1662.0
#
#
#=======================================
BSNT_05813___ 1 TTGAAACAGCTTTTACAAGACAGCTGGTGGAATCAGCT-------AAAG- 42
.||||.|...|||||.|.||.||||||||| ||| ||||
BPUM_3444___u 1 ATGAAGCCATTTTTAAATGATAGCTGGTGG-----GCTGTGATGAAAAGT 45
BSNT_05813___ 43 GAAGAGTTTGAGAAACCGTATTATCAAGAGCTCAGAGAAATGCTGAAGCG 92
||| |||||..|.||.||||||||.||..|..|.|||..|.|||||..
BPUM_3444___u 46 GAA---TTTGAACAGCCATATTATCAGGAATTACGTGAATGGATGAAGGA 92
BSNT_05813___ 93 GGAATA-CGCGGA-GCAAACGATTTATCCGGACAGCCGG--GATATTT-T 137
.||||| ||| | |||.||..|||.|||| .|.|||| ||..||| |
BPUM_3444___u 93 AGAATATCGC--ACGCAGACCGTTTTTCCG--AAACCGGATGACGTTTAT 138
BSNT_05813___ 138 CAATGCGCTGCATTATACATCATATGATGATGTCAAGGTCGTCATTCTGG 187
| .||||||.||||..|||||||||||.||.|||||.||.||.|||.|||
BPUM_3444___u 139 C-GTGCGCTTCATTTGACATCATATGAAGAGGTCAAAGTGGTGATTTTGG 187
BSNT_05813___ 188 GACAAGATCCGTATCACGGGCCGGGACAGGCTCAAGGTTTAAGCTTCTCT 237
|||||||.||.|||||.||.||.||||||||.||.||.||||||||.|||
BPUM_3444___u 188 GACAAGACCCTTATCATGGCCCAGGACAGGCACATGGATTAAGCTTTTCT 237
BSNT_05813___ 238 GTCAAGCCCGGTGTAAAGCAGCCGCCTTCGTTAAAAAATATTTTTCTTGA 287
|||.||||.||.||.|||||.||.||.|||||.|.|||||||||||..||
BPUM_3444___u 238 GTCCAGCCTGGCGTGAAGCATCCACCATCGTTGAGAAATATTTTTCAGGA 287
BSNT_05813___ 288 GCTGCAGCAGGATATCGG--GTGCAGCATCCCGAATCACGGGTCGCTTGT 335
|||..||.|.|||.|.|| ||.|.| |.||.||||||||.||.|||||
BPUM_3444___u 288 GCTAAAGGATGATCTTGGCTGTCCTG--TTCCAAATCACGGCTCACTTGT 335
BSNT_05813___ 336 GAGCTGGGCAAAGCAAGGCGTTCTTTTGCTGAATACTGTGCTGACAGTAA 385
||||||||||.|||||||.||.||..|..|.||.||||||.||||.||||
BPUM_3444___u 336 GAGCTGGGCAGAGCAAGGTGTGCTGCTCTTAAACACTGTGTTGACCGTAA 385
BSNT_05813___ 386 G---GCGCGGACAGGCGAATTCCCATAAGGGAAAAGGCTGGGAGCGACTG 432
| |.||| |||||||.||.|||||.||.|||||||||||.||..||
BPUM_3444___u 386 GAAAGGGCG---AGGCGAACTCGCATAAAGGCAAAGGCTGGGAACGTGTG 432
BSNT_05813___ 433 ACGGACCGAATTATTGACGTGCTGAGTGAAAGAGAGCGGCCGGTTATCTT 482
||.|||||..|.||.||.|.|||||.||||.|.||.|.|||.||..|.||
BPUM_3444___u 433 ACAGACCGTGTGATAGATGCGCTGAATGAACGTGATCAGCCCGTCGTTTT 482
BSNT_05813___ 483 TATTTTGTGGGGACGGCATGCTCAAATGAAAAAAGAACGGATCGACACCT 532
|.|..||||||||.|.||||||||||..||.||||||||.||.|||
BPUM_3444___u 483 TGTGCTGTGGGGAAGACATGCTCAAAATAAGAAAGAACGCATTGAC---- 528
BSNT_05813___ 533 C----CAAGCATTTTATCATTGAATCGACGCATCCCAGCCCGTTTTCTGC 578
| ||||||||..||||||||.||..|.|||||.||.||.|||||.||
BPUM_3444___u 529 CAAAACAAGCATTACATCATTGAGTCACCTCATCCAAGTCCTTTTTCAGC 578
BSNT_05813___ 579 GAGAAACGGATTTTTCGGGAGCAGACCGTTTTCCCGGGCGAATGCCTATT 628
.||||||||.|||||.||.||..|.||||||||...||..||.||.||||
BPUM_3444___u 579 AAGAAACGGCTTTTTTGGCAGTCGTCCGTTTTCAAAGGTAAACGCGTATT 628
BSNT_05813___ 629 TGGAGAAAATGGG---AGAGGCGCCGATTGATTGGTGTATTAAGGAT-TT 674
|..||.||||||| |||.| ..|||.||||||||||..|.||| ||
BPUM_3444___u 629 TAAAGCAAATGGGGACAGAAG---AAATTAATTGGTGTATCCAAGATATT 675
BSNT_05813___ 675 G--TAA 678
| |||
BPUM_3444___u 676 GAATAA 681
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