Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05809 and BPUM_3442
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_05809___ywdI.1.24716.seq
# -bsequence dna-align/BPUM_3442___ywdI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05809___ywdI-BPUM_3442___ywdI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05809___ywdI-BPUM_3442___ywdI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05809___ywdI
# 2: BPUM_3442___ywdI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 369
# Identity: 227/369 (61.5%)
# Similarity: 227/369 (61.5%)
# Gaps: 87/369 (23.6%)
# Score: 653.0
#
#
#=======================================
BSNT_05809___ 1 ATGAACATTCATATAT-----CTGCATTAATTCAAAAGATGGAAGAGGAG 45
.||||.|||||||||| |||| |.|||||.|||||.||.|.|
BPUM_3442___y 1 TTGAATATTCATATATCAAGCCTGC-----TCCAAAAAATGGATGAAGCG 45
BSNT_05809___ 46 CTGAAAAAAGC-AAAAACAGCTGAACGGGATGAGGAGCTGAAGCGTTATG 94
.|..||||.|| |||.|.|| ||.|...|||||.|||.||||.|||.|.|
BPUM_3442___y 46 GTTCAAAAGGCGAAACAAAG-TGGAAATGATGAAGAGGTGAAACGTCAAG 94
BSNT_05809___ 95 TAGCGG---TTGTCCGTTCTCTGTGTGATGTCGTGCTTGAT--------- 132
|.|||| || || |||.||.|||||||||.|.||.|||
BPUM_3442___y 95 TGGCGGCGATT-TC--TTCACTATGTGATGTCATACTCGATGCACCATCA 141
BSNT_05809___ 133 ------CA---GCCGGAGAAC----GTGAGCGCGCCCCGC-------ATA 162
|| ||||.| ||| ||||.|.||||.| | |||
BPUM_3442___y 142 CAGGTGCAAATGCCGCA-AACGCCGGTGATCTCGCCAC-CTTCTTCGATA 189
BSNT_05809___ 163 CAGCCGAGCGTTACGCCAAGTCCCGCCGCGCCGCC---ATCGACAGA-CC 208
|||.| |.||| |||||||||| |||..|||| |.
BPUM_3442___y 190 CAGAC-ACCGT--------------CCGCGCCGCCCGTATCCTCAGATCA 224
BSNT_05809___ 209 AGCTGATGATGGAAAAAATGATGGG---GA---GCGCGGGATTAAACAAA 252
||| ||||.|.||.|||.||||||| || |.||| ||.|||
BPUM_3442___y 225 AGC-GATGCTTGAGAAACTGATGGGTGCGAGTGGTGCG------AAGAAA 267
BSNT_05809___ 253 TTTCGAAAGCAAGAAAAAGAGAAGCAGGAAG---AGGATGGAAACGGAGA 299
|||| ||||..||.|||||..|||..||| |||||||.|||||.||
BPUM_3442___y 268 TTTC---AGCATCAAGAAGAGGGGCAAAAAGAGAAGGATGGGAACGGCGA 314
BSNT_05809___ 300 GTCTTTATTTGATTTTTAA 318
.|||.|.||||||||||||
BPUM_3442___y 315 CTCTATCTTTGATTTTTAA 333
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