Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05800 and BPUM_3435
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_05800___spsB.1.24716.seq
# -bsequence dna-align/BPUM_3435___spsB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05800___spsB-BPUM_3435___spsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05800___spsB-BPUM_3435___spsB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05800___spsB
# 2: BPUM_3435___spsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1625
# Identity: 924/1625 (56.9%)
# Similarity: 924/1625 (56.9%)
# Gaps: 412/1625 (25.4%)
# Score: 2310.0
#
#
#=======================================
BSNT_05800___ 1 TTGTCGGCCTAT-TTAAGCAATTATTGGGTGCTGTACCGGAAGTACGT-- 47
.|||||..|||| ||.|.| ||||||||..|.|||||....|||..||
BPUM_3435___s 1 GTGTCGCACTATATTCATC-ATTATTGGCAGGTGTACTTTGAGTTTGTAA 49
BSNT_05800___ 48 ----------GGAGCTTTTTGACAAACTTCGCTACAAAGGGATTCCGCTT 87
||| |||| .|||..|.|||| |||||||||
BPUM_3435___s 50 ATCTCATGAAGGA----TTTG----TCTTATCGACAA----ATTCCGCTT 87
BSNT_05800___ 88 GGGCTTATCAGTAATTTTTATCAATACATCAGCCCTGAGCTGAGGGTGAT 137
||..|.|||||.|||||.||||||||.|||||.||||||.|.|||| .|.
BPUM_3435___s 88 GGATTGATCAGCAATTTCTATCAATATATCAGTCCTGAGGTAAGGG-AAC 136
BSNT_05800___ 138 G-ATGGAAGAAGAACCGGAATTATTCGGATCGGTGGATC-AGCAT----- 180
| |||||.||.|||.| |||||| || ||.||
BPUM_3435___s 137 GTATGGAGGATGAAGC------ATTCGG---------TCAAGAATTGACA 171
BSNT_05800___ 181 ATCGAT---------GAGGGACAGATTCAGCCGTTTTTTGAAGAAAGAAT 221
|.|||| ..||.|.||||||||||.||||||||
BPUM_3435___s 172 ACCGATTGTCCGTTGCCGGAAGAGATTCAGCCATTTTTTGA--------- 212
BSNT_05800___ 222 TCAAAACATCGTTAA--AACAAATGACAAACCTGTT-------------- 255
||||.| ||| |.||.|| |||.|.|.||
BPUM_3435___s 213 TCAACA------TAAGCAGCAGAT--CAAGCGTATTGCGTATCATCCGGC 254
BSNT_05800___ 256 AAAGGGAAAG--------TCATTTTGCACTTTGATTACCTGCGTTTTTC- 296
.||.|||||| ||||||||.|| |.|||||||||.|
BPUM_3435___s 255 GAATGGAAAGGTCTTGCTTCATTTTGAAC-------ATCTGCGTTTTACT 297
BSNT_05800___ 297 AAACGGAAATTACTATCAATTTGATCCTGAAA--AAACGGCTGTTTTGGC 344
.||| .|||||||..||.|||..|||| ||| ||||.|
BPUM_3435___s 298 GAAC-AAAATTACACTCGATTCCATCC--AAATCAAACCG---------- 334
BSNT_05800___ 345 CAGATGGAGTTTGC-CGC-------------ATTATTGTGATCTGCCTGT 380
|||.|.|||| ||| |.||||..|.|.|.|||||
BPUM_3435___s 335 ----TGGTGCTTGCTCGCTGGAAGAAGGCAGACTATTTCGGTTTACCTGT 380
BSNT_05800___ 381 AATTAGCAAGCGGGAGATT-GCG-----GATTCATGCCAAA-AAGGCGAT 423
.||.|||||||.||| ||| ||| |.||.|| ||| |||.|.||
BPUM_3435___s 381 CATCAGCAAGCCGGA-ATTAGCGGGAGAGGTTAAT---AAAGAAGCCCAT 426
BSNT_05800___ 424 TC-GAAGCAGTATCTCGAAACAGC--CTGTTCGCTTCTCGCC-----CCT 465
.| ||| |||.|.||.|.||| .|| |||.|| |||
BPUM_3435___s 427 GCTGAA----TATATTGAGAAAGCAAATG-------CTCTCCTTAAACCT 465
BSNT_05800___ 466 TATGATGATCACCCGGCATTTGGTGATCAAGCGTTTCGCGACCGGCTTTT 515
||.|...|.|||||.|..|||||..|| ||.| ||||
BPUM_3435___s 466 TACGCAAAGCACCCTGTCTTTGGCAAT-----GTCT----------TTTT 500
BSNT_05800___ 516 CAAAGATA---TTC-------CTTT-----ATTTATAGAGGCCATTG--- 547
.|.|||.| ||| |.|| ||||||.||.|.|||||
BPUM_3435___s 501 TAGAGAAAAGCTTCGGAAGGACATTGTGCAATTTATTGATGTCATTGACC 550
BSNT_05800___ 548 ATACAGTTGATGCGCTGTTTGAACAGGAAAAGATTTCAGCTGTTATTGTC 597
|.||| ||.|.|||.|||.|...|||....|||.||||..||.||||.
BPUM_3435___s 551 AGACA---GAAGTGCTATTTCAGATGGAGCCAATTGCAGCAATTGTTGTG 597
BSNT_05800___ 598 GG---AACGGCAGAAGACATTTACAGCAGGGTGCTCGCTCTCATGTGTCA 644
|| ||||| ||.|..|| ||||||.|.||.||.||.|| .||
BPUM_3435___s 598 GGGACAACGG-AGGATGCA--TACAGCCGCGTACTTGCACT------GCA 638
BSNT_05800___ 645 AA----GAAAAGGGGCCGTCAGC--------ATTTGTCTTCAGCATGGCG 682
|| |||| ||||||| ||.|||||||||||.||||
BPUM_3435___s 639 AACTGTGAAA------CGTCAGCTCACGAGTATCTGTCTTCAGCACGGCG 682
BSNT_05800___ 683 CATTGATGGGAGATGAAGCCTTCATTCCTGTTTTTACAACCTATCAAGCT 732
||.||||||||||.||||||||..|.||..||||.||.||.|..||.|..
BPUM_3435___s 683 CACTGATGGGAGACGAAGCCTTTTTACCGATTTTCACGACGTGCCACGGG 732
BSNT_05800___ 733 GTTTTTGGTGCGTATGAAGCAGAGTGGTTCATACGA-AAAGGCTGTAAAC 781
||.|||||....||||||..|||.||||...|| || |||||||||.|||
BPUM_3435___s 733 GTGTTTGGAAAATATGAAAAAGACTGGTATGTA-GACAAAGGCTGTCAAC 781
BSNT_05800___ 782 CCGAGCAGATTCTCGTAACGGGACATCCCCGCTTCGAT-------CAGAT 824
|.||.|||.|....||.||.||.|||||..|.||.||| .||||
BPUM_3435___s 782 CGGAACAGGTGGAGGTCACAGGTCATCCGAGGTTTGATTTGGTGAAAGAT 831
BSNT_05800___ 825 TTTTAACAGAACGCCTAT------GGATATGTCCATATTCTATCGAAAAC 868
.|||||||..| |||..| || |||.|||.|||
BPUM_3435___s 832 -------CGAACGCCGCTTCAGCAGGAACT---CA---TCTTTCGTAAA- 867
BSNT_05800___ 869 TTGCTT----TTCA-----GCCGACTAAAAAAATTGTGCTCATTGCCACT 909
|| |||| ||| |||||.|..||.||..|.||.||.
BPUM_3435___s 868 ----TTAAACTTCAATCCTGCC----AAAAAGACCGTACTTGTAGCGACG 909
BSNT_05800___ 910 CAGCCCTTTTCAGAAGACTTT-TATTCCGGTGTGCTGCAGGGGCTTTCTG 958
|||||.||||||||| ||||| |||...|.||||||..|...|.||.|..
BPUM_3435___s 910 CAGCCGTTTTCAGAA-ACTTTCTATGGTGATGTGCTTAAAACGATTGCAA 958
BSNT_05800___ 959 ATCAGAAGCAGCTGCAGATCATTATCAAACCCCACCCGTGGGAAATCG-- 1006
|.|.|||..|..|.|||.|.||.||.||.||.||.|||||||||||||
BPUM_3435___s 959 AACGGAAAGACATTCAGTTGATCATGAAGCCGCATCCGTGGGAAATCGCC 1008
BSNT_05800___ 1007 -GAAA------AAACAAGCTTG-ATCTGTATCAC---GAG-GCGGCGAAA 1044
|||| ||| || ||.|||.|| | ||| ||
BPUM_3435___s 1009 CGAAACCGATTAAA------TGAATATGTGTC-CATTGAGCGC------- 1044
BSNT_05800___ 1045 AAACA-TAAAGCATG-CAGAGTCATCAAAAAGGAGCTGGAGCTT-TATGA 1091
||| .|||.|||| .|||.|.||.|||||.||..|.|| ||| |||||
BPUM_3435___s 1045 --ACAGGAAATCATGTGAGATTGATTAAAAAAGAAATCGA-CTTGTATGA 1091
BSNT_05800___ 1092 TTTGCTGCCGTATGCTGATGCCG-CAGTGACGCAGACCTCGACAGTCGGT 1140
..|||||||.|||...|||...| || |.||||..||.||.||.||||||
BPUM_3435___s 1092 CCTGCTGCCATATATGGATATGGTCA-TTACGCTTACATCAACCGTCGGT 1140
BSNT_05800___ 1141 CTTGAAGCCATGCTGTTTCAAAAGCCTGTGCTGATC-GGAAAATCGTC-- 1187
||||||||.|||||.|||.|||||..|||||||||| ||||||| |.|
BPUM_3435___s 1141 CTTGAAGCAATGCTCTTTGAAAAGAGTGTGCTGATCGGGAAAAT-GACAG 1189
BSNT_05800___ 1188 ----CGGAAATCGCTCG-TATCCGTATTATGAGTCTCTTG---GCGATTT 1229
|.||| | ||.||.|||||.|||||.|||| ||.||..
BPUM_3435___s 1190 AAGGCAGAA-------GATACCCTTATTACGAGTCGCTTGGCAGCTATCA 1232
BSNT_05800___ 1230 TATGTTTGACCAGCCGGATGAACTAGCGCACA----CCTTGGTTGAAGTT 1275
|||| ||..|.||.|.||||||.||..|.| |.||.|| |.||
BPUM_3435___s 1233 TATG---GAAAACCCTGTTGAACTGGCTGAGAAAGCCATTCGT---ATTT 1276
BSNT_05800___ 1276 CTTCGAAGTCCCGACGTGCATCAA--------------AAAGCAGAAGAG 1311
..|||.| || ||||| |||||||.| ||
BPUM_3435___s 1277 TATCGGA---------TG-ATCAAGAGATGAAGCTAGCAAAGCAGCA-AG 1315
BSNT_05800___ 1312 GCGC---GCCTGGCATTCAT--AGCGGCTAATTATCCGGTGGCAGAATCA 1356
|.|| | ||||| |.|.|| ||||||||...||...|||.
BPUM_3435___s 1316 GAGCTAAG-------TTCATTAAACAGC--ATTATCCGCATGCGCGATCG 1356
BSNT_05800___ 1357 ACAAA-----TGCTTTATTTGCGGAACTGAAAGCCAAAACAGGGGTTGA- 1400
||..| ||||||.|.|| ||.|||.|.||||||||.||.||
BPUM_3435___s 1357 ACCGATGTGTTGCTTTCTCTG-----CTTAAAACAAAAACAGGTGTAGAT 1401
BSNT_05800___ 1401 TTACAGGCGGGAAGATACTGAATAA 1425
||.||| ||| |||
BPUM_3435___s 1402 TTTCAG------AGA---TGA---- 1413
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