Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05791 and BPUM_3429
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_05791___spsI.1.24716.seq
# -bsequence dna-align/BPUM_3429___spsI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05791___spsI-BPUM_3429___spsI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05791___spsI-BPUM_3429___spsI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05791___spsI
# 2: BPUM_3429___spsI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 805
# Identity: 510/805 (63.4%)
# Similarity: 510/805 (63.4%)
# Gaps: 128/805 (15.9%)
# Score: 1504.5
#
#
#=======================================
BSNT_05791___ 1 GTGAAAGGTGTTATTTTAGCCGGAGGAAACGGCTCACGCCTTATGCCCTT 50
|||||.||.|||||||||||.||||||||.||.|||||.||....|||||
BPUM_3429___s 1 GTGAAGGGAGTTATTTTAGCAGGAGGAAAGGGATCACGACTGGCACCCTT 50
BSNT_05791___ 51 AACGAAAG-CCGTCAACAAGCATTTGCTTCCTGTAGGCCCGTATCCGATG 99
||| |||| ...||||.||.|||||..|.||.||.|||||.|||||||||
BPUM_3429___s 51 AAC-AAAGATTTTCAATAAACATTTATTGCCGGTTGGCCCATATCCGATG 99
BSNT_05791___ 100 ATATACTGGTCGATT-ATGAAGCTGGAAGAAGCCGGAA---TAAAAGACA 145
||.||.||||| ||| .|.||..||.|||||||.|||| ||.|.|.||
BPUM_3429___s 100 ATTTATTGGTC-ATTGTTCAAATTGAAAGAAGCGGGAATTTTAGATGTCA 148
BSNT_05791___ 146 TTTTACTCATCAGCCAAAAGGAGCATATGCCGCAATTTTACAAACTGCTT 195
|..| |..|||| |||...||.||.||.|||...|||.|.|||||||||
BPUM_3429___s 149 TGGT-CATATCA--CAAGCAGAACAAATCCCGTTGTTTCAAAAACTGCTT 195
BSNT_05791___ 196 GGGAACGGGG---AAGAGCTTGGCGTTACTATCACTTATCAAGTACAGCC 242
| |.||.| |.||.|||||..|.|..|||...||||||||||||||
BPUM_3429___s 196 G---AAGGTGATCAGGAACTTGGGATGAACATCGTGTATCAAGTACAGCC 242
BSNT_05791___ 243 GGCAGCATCGGGCATTTCGGATGGGCTGTCTTATGCAAAGCGCTT--TAC 290
.|.|||.||.||.|||||.||.||..||||.||||||||||..|| ||
BPUM_3429___s 243 TGAAGCTTCTGGAATTTCAGACGGTTTGTCCTATGCAAAGCCATTTGTA- 291
BSNT_05791___ 291 GAA----AAAAGAGTCTTTCATTT-TA-TTAT--TAGGTGATAATATATT 332
||| ||||| ||| || |.|| |.|||||||||.||||
BPUM_3429___s 292 GAAGGTGAAAAG---------TTTGTACTCATGCTTGGTGATAATGTATT 332
BSNT_05791___ 333 TGAAGATTCATTAAAGCCTTATACAGAACG-CTTTGAACAGCAGGGGAAA 381
||||||||| |...||||.|.|.....||| ||||.|.|.||| .||||
BPUM_3429___s 333 TGAAGATTC-TCTGAGCCCTTTCGTTGACGCCTTTCAGCGGCA--AGAAA 379
BSNT_05791___ 382 --GGAGCAAAAGTGCTTCTGAAAGAAGTTGA-TGACCCGGAACGTTTCGG 428
||.||.||.||..|..||||||||| ||| .||.||..|.||.||.||
BPUM_3429___s 380 GCGGTGCGAAGGTTTTGTTGAAAGAAG-TGACAGATCCAAAGCGGTTTGG 428
BSNT_05791___ 429 GATTGCTGAGATTGATGAGAAAAACAAGCGGATTCGTTCCATCATC---- 474
.|||||.||.||||||| |..||||.||.|
BPUM_3429___s 429 CATTGCAGAAATTGATG-----------------CCGTCCACCAACGAAT 461
BSNT_05791___ 475 -------------GAAAAGCCCGAACAGCCACCGACCAACCT-TTGTGTT 510
|||||.||.||.||.|| .||..||.||| .||.||.
BPUM_3429___s 462 AGTATCAATTGAGGAAAAACCGGAGCATCC-GCGTTCATCCTACTGCGTC 510
BSNT_05791___ 511 ACCGGCATTTATATGTATGATGCAGAGGTGTTTTCATATATTGAACAAAT 560
||.||.||.|||.|.||||||..|||.||.|||..|||||||||..||||
BPUM_3429___s 511 ACGGGTATCTATTTTTATGATCAAGAAGTCTTTCAATATATTGAGAAAAT 560
BSNT_05791___ 561 ATCACCATCAAAGCGCGGCGAGCTGGAAATCACCGATGTGAATAATCTAT 610
.||.||||||.|.||.|||||..|.||.||.||.|||||.||.|||||.|
BPUM_3429___s 561 CTCGCCATCAGATCGAGGCGAATTAGAGATTACAGATGTAAACAATCTCT 610
BSNT_05791___ 611 ACATCGAAAACAGCCAGCTTACGTATGATGTGTTATCAGGCTGGTGGGTA 660
|.|||..|||.||.|||||.||.||||||.|||||..|||.||||||.|.
BPUM_3429___s 611 ATATCTCAAATAGTCAGCTGACCTATGATATGTTAAAAGGGTGGTGGATT 660
BSNT_05791___ 661 GATGCCGGAACTCACGAATCGCTTTATCTCGCTTCCCAGCTTGTACACCA 710
|||||.|||||.||.||||| |||| |||||
BPUM_3429___s 661 GATGCAGGAACACATGAATC------TCTC---------------CACCA 689
BSNT_05791___ 711 GGC-------------TTT---ACG-----GAAAGGACAGG---ACGAAA 736
.|| ||| ||| ||||..|.||| |||||
BPUM_3429___s 690 AGCATCAACGAAAATGTTTGAAACGATGAAGAAAAAAGAGGGATACGAA- 738
BSNT_05791___ 737 AGTGA 741
|||
BPUM_3429___s 739 --TGA 741
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