Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05768 and BPUM_3424
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:20
# Commandline: needle
# -asequence dna-align/BSNT_05768___ywfG.1.24716.seq
# -bsequence dna-align/BPUM_3424___ywfG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05768___ywfG-BPUM_3424___ywfG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05768___ywfG-BPUM_3424___ywfG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05768___ywfG
# 2: BPUM_3424___ywfG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1297
# Identity: 806/1297 (62.1%)
# Similarity: 806/1297 (62.1%)
# Gaps: 197/1297 (15.2%)
# Score: 2244.0
#
#
#=======================================
BSNT_05768___ 1 ATG--GAAATAACACCGTCCGATGT---CATCAAGACA-----------C 34
.|| ||| |||.| ||||.| ||| |
BPUM_3424___y 1 GTGGTGAA------------GATCTTACCATCTA-ACATGATTGAACGGC 37
BSNT_05768___ 35 TTCCAAGGCAAGAGTTTTCTCTCGTTTTTCAAAAGGTAAAGGAAATGG-- 82
|.|||...|||.|.|||.....|||.||| .||.||||.|
BPUM_3424___y 38 TACCAGAACAAAAATTTGGAACCGTGTTT---------GAGAAAATAGCG 78
BSNT_05768___ 83 ---AAAAAAC----GGGGGCCCATATCATTAATCTCGGACAGGGGAACCC 125
||||.|| |||.||..|.||||||||.||.||.|||||.||.||
BPUM_3424___y 79 CATAAAACACAACAGGGAGCGAACATCATTAACCTTGGTCAGGGAAATCC 128
BSNT_05768___ 126 TGACCTTCCCACTCCGCCGCATATTGTGGAGGCTTT-------GCGGGAG 168
.||.|||||.||.||..|.|||||||||...|||.| ||.|.||
BPUM_3424___y 129 CGATCTTCCTACCCCTGCACATATTGTGTGTGCTCTTCAAGAAGCAGCAG 178
BSNT_05768___ 169 GCTTCTCTGAATCCTTCGTTTCATGGATACGGCCCTTTCAGGGGCTATCC 218
|| |||.|| .|.|||||...|||.|..|||||.||.||||.|..
BPUM_3424___y 179 GC-TCTTTG------CCATTTCAGCAATATGCACCTTTTAGAGGCTTTGA 221
BSNT_05768___ 219 TTTTTTAAAGGAAGCGATCGCTGCTTTCTATAAAAGGGAA-----TACGG 263
.|||||.|||.||||.||.||.|.||||||.|.||.|||| ||..|
BPUM_3424___y 222 CTTTTTCAAGCAAGCTATTGCGGATTTCTACAGAAAGGAATTTAGTATCG 271
BSNT_05768___ 264 AG--TGACAATCAATCCTGAA-ACGGAGGTCGCGCTTTTCGGAGGCGGGA 310
|| ||| ||.||| |.|||..|.||.||||||...||.||.|
BPUM_3424___y 272 AGGTTGA--------CCCGAAGAAGGAAATTGCCCTTTTCACTGGAGGAA 313
BSNT_05768___ 311 AAGCCGGTTTGTATGTGTTGACACAATGCCTGCTCAATCCGGGAGACATC 360
||.|.||..|.|||||..|||..||.||.|||||..||||.||.|||||.
BPUM_3424___y 314 AAACAGGCCTTTATGTAATGAGTCAGTGTCTGCTTGATCCAGGGGACATT 363
BSNT_05768___ 361 GCTTTAGTCCCGAATCCAGGCTACCCTGAATATTTATCAGGGA--TTACG 408
||.||.|||||..||||.||.|||||.||||||...|||||.| |||
BPUM_3424___y 364 GCCTTTGTCCCCGATCCTGGATACCCAGAATATCATTCAGGTATCTTA-- 411
BSNT_05768___ 409 ATGGCGCGAGCTG---AGCTTTACGAAATGCCGCTGTATGAAGAAAATGG 455
||||| ||.|| |||..|||...||.|.|||..|.||.||||||||
BPUM_3424___y 412 ATGGC---AGATGCAAAGCCATACTGCATCCGGCTAGAAGAGGAAAATGG 458
BSNT_05768___ 456 CTATCTGCCGGATTT-TGAAAAGATTGATCCAGCCGTGCTGGAAAAAGCG 504
||||.|||||.|||| |.|..| ||||||||||.||||.|..||||.||.
BPUM_3424___y 459 CTATTTGCCGAATTTCTCATCA-ATTGATCCAGGCGTGTTAAAAAAGGCA 507
BSNT_05768___ 505 AAGCTTATGTTTTTAAACTATCCGAACAATCCCACTGGAGCTGTGGCTGA 554
|||.|..|.||.|||||.||||||||.||.||.||.||.||.|||||..|
BPUM_3424___y 508 AAGGTCCTTTTCTTAAATTATCCGAATAACCCAACAGGTGCGGTGGCAAA 557
BSNT_05768___ 555 TGCGGCTTTTTATGCAAGA-GCTGCTGCTTTTGCGAAAGAGCATAACATC 603
||.||||||||.|| |||| |||||.||.||||| |...|| ||
BPUM_3424___y 558 TGAGGCTTTTTTTG-AAGAGGCTGCGGCATTTGC-------CTCTAC-TC 598
BSNT_05768___ 604 --------CATTTGATTCATGATTTTGCATACGGAGCGTTTGAATTCGAT 645
|||.||||||||||||||||.||.||..|.|||.|.|.|||.
BPUM_3424___y 599 ACGGTCTTCATGTGATTCATGATTTTGCTTATGGCTCCTTTCATTACGAG 648
BSNT_05768___ 646 CAAAAACCGGCCAGTTTTCTTGAGGCAGAGGATGCC-------AAAATTG 688
||||||||....||.|||||..|.|| .|| ||||..|
BPUM_3424___y 649 CAAAAACCTATAAGCTTTCTAAAAGC-------TCCTCTTGGAAAAAACG 691
BSNT_05768___ 689 TCGGAGCAGAGCTTTATTCATTTTCAAAAACATTTAACATGGCCGGCTGG 738
|.||.|..||.||.|||||.||.||.||||||||.||.|||||.||.|||
BPUM_3424___y 692 TAGGCGTGGAACTATATTCTTTATCCAAAACATTCAATATGGCAGGATGG 741
BSNT_05768___ 739 AGAATGGCGTTTGCGGTTGGGAACGAAAGG--ATCATTCAGGCCGTCAAT 786
|||.|.||.|||||.||.||.||.| ||| ||||||||.|||.|.||.
BPUM_3424___y 742 AGAGTCGCTTTTGCTGTAGGCAATG--AGGACATCATTCATGCCATTAAC 789
BSNT_05768___ 787 GAATTTCAGGATCATGTATTTGTCGGCATGTTCGGCGGGCTGCAGCAGGC 836
|..||.||.||||||.||||||||.|.||||..|||||..|.|||||.||
BPUM_3424___y 790 GCTTTCCAAGATCATATATTTGTCAGTATGTATGGCGGATTTCAGCATGC 839
BSNT_05768___ 837 AGCGAGTGCGGCGCTTT-----CTGGAGA-TCCGGAGCATACGGAATCGT 880
.||.| .||.|||||| .||..|| || .||||...||||.|
BPUM_3424___y 840 CGCCA--CCGTCGCTTTACAAAGTGATGACTC----TCATATTCAATCTT 883
BSNT_05768___ 881 TGAAACGAA-TTTATAAGGAACGAATTGACTTTTT---TACGGC--GCTT 924
||||| ||| |.||....||||||| |||||||.| |.||.| ||
BPUM_3424___y 884 TGAAA-GAAGTCTACCTTGAACGAA-TGACTTTCTTCATCCGTCAAGC-- 929
BSNT_05768___ 925 TGTGAAAAGGAATTGGGCTGGAAGATGGAA----AAGCCAAAAGGAACCT 970
|||.|||.||.|.|||||||..||.|.| .|||| ||..|||
BPUM_3424___y 930 --TGAGAAGCAACTTGGCTGGACCATTGCACGTCCAGCC----GGCGCCT 973
BSNT_05768___ 971 TTTACGTATGGGCTGAAATTCC----GAATACGTTTGAGACATCTCACCA 1016
||||..|.|||||....||||| ||| ||.|||...||.||...
BPUM_3424___y 974 TTTATTTGTGGGCACCGATTCCTGATGAA----TTCGAGGATTCCCATAC 1019
BSNT_05768___ 1017 ATTTTCCGATTACTTGCTGGAGCATGCCCATGTCGTAGTCACACCGGGCG 1066
||||.||||.||.||.||.||||||||..|||||||.||.||.||.||.|
BPUM_3424___y 1020 ATTTGCCGACTATTTACTCGAGCATGCAGATGTCGTCGTGACGCCTGGGG 1069
BSNT_05768___ 1067 AAATTTTTGGAAGCA-ACGGAAAAAGGCATGTCAGAATTTCAATGGTG-- 1113
...|||||||.| || ||||||.|.|.||||||.|.||.|||||||||
BPUM_3424___y 1070 GTGTTTTTGGCA-CACACGGAAGACGTCATGTCCGCATCTCAATGGTGGC 1118
BSNT_05768___ 1114 -----TCGAAGCAGGAGGATCTGCGGGAATTTGTCACGCGGATTCAAAAG 1158
|.||| |||...|.||| .|||.||...|||.| |
BPUM_3424___y 1119 GCCAATTGAA-CAGCTTGCTCT------CTTTATCGATCGGCT------G 1155
BSNT_05768___ 1159 CTGAACCTGCCG-TTCG-GGTCATTACAAGAAACATCCCGCTAA--- 1200
|..|.||||||| |||| ..|||| |||.||| |||||..|
BPUM_3424___y 1156 CATATCCTGCCGATTCGCTTTCAT--CAAAAAA---CCCGCATATAG 1197
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